Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   Q3Y56_RS19740 Genome accession   NZ_CP130713
Coordinates   4584113..4585528 (-) Length   471 a.a.
NCBI ID   WP_304463206.1    Uniprot ID   -
Organism   Streptomyces sp. XD-27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4579113..4590528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y56_RS19705 (Q3Y56_19705) - 4579160..4579555 (+) 396 WP_304465913.1 hypothetical protein -
  Q3Y56_RS19710 (Q3Y56_19710) - 4579497..4579724 (-) 228 Protein_3907 hypothetical protein -
  Q3Y56_RS19715 (Q3Y56_19715) - 4579889..4580113 (+) 225 WP_304463202.1 hypothetical protein -
  Q3Y56_RS19720 (Q3Y56_19720) - 4580336..4581064 (+) 729 WP_304463203.1 response regulator transcription factor -
  Q3Y56_RS19725 (Q3Y56_19725) - 4581133..4581771 (-) 639 WP_304463204.1 phosphatase PAP2 family protein -
  Q3Y56_RS19730 (Q3Y56_19730) - 4581947..4582765 (+) 819 WP_304463205.1 hypothetical protein -
  Q3Y56_RS19735 (Q3Y56_19735) disA 4582920..4583978 (-) 1059 WP_304465693.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  Q3Y56_RS19740 (Q3Y56_19740) radA/sms 4584113..4585528 (-) 1416 WP_304463206.1 DNA repair protein RadA Machinery gene
  Q3Y56_RS19745 (Q3Y56_19745) - 4586068..4587654 (+) 1587 WP_304463207.1 sigma-70 family RNA polymerase sigma factor -
  Q3Y56_RS19750 (Q3Y56_19750) - 4587823..4588641 (-) 819 WP_304463208.1 hypothetical protein -
  Q3Y56_RS19755 (Q3Y56_19755) - 4588706..4589638 (+) 933 WP_304463209.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 49698.80 Da        Isoelectric Point: 7.7071

>NTDB_id=786867 Q3Y56_RS19740 WP_304463206.1 4584113..4585528(-) (radA/sms) [Streptomyces sp. XD-27]
MAARTSRSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGAPAVRTTAPGRVTSAALPIGQVDGRQATARGTGVP
ELDRVLGGGLIPGAVVLLAGEPGVGKSTLLLDVAAKAADDDHRTLYITGEESASQVRLRADRIGALSDHLYLAAETDLSA
VLGHLDTVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGRRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAARLGFTHALVPGDPGRIPEGMRVQEVADIGDALRVLPRRVRREAPREEVERR

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=786867 Q3Y56_RS19740 WP_304463206.1 4584113..4585528(-) (radA/sms) [Streptomyces sp. XD-27]
ATGGCTGCCCGTACCTCCCGCTCGTCCGCCAAGGACCGGCCCTCCTACCGCTGCACCGAGTGCGGCTGGACCACCGCCAA
GTGGCTCGGCCGCTGCCCGGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGCGCCCGCCGTGCGGACCACCGCGC
CCGGCCGGGTCACCTCGGCCGCGCTCCCCATCGGCCAGGTCGACGGCCGCCAGGCCACCGCGCGGGGCACCGGCGTTCCC
GAGCTGGACCGGGTGCTGGGCGGCGGGCTGATCCCCGGGGCCGTCGTGCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTC
CACGCTGCTGCTGGACGTCGCCGCCAAGGCCGCCGACGACGACCACCGCACGCTCTACATCACCGGCGAGGAGTCCGCGA
GCCAGGTGCGGCTGCGCGCCGACCGCATCGGCGCGCTCAGCGACCATCTGTACCTCGCCGCCGAGACCGACCTGTCCGCC
GTCCTCGGCCACCTCGACACCGTCAAGCCGTCGCTGCTGGTCCTCGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGA
CGGCGCGCCCGGCGGCATGGCGCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGGGCGTCGAAGGAGCGCGGCATGGCCA
CCCTGCTCGTCGGCCATGTCACCAAGGACGGGGCCATCGCGGGCCCGCGCCTGCTGGAGCACCTGGTGGATGTCGTGCTG
AGTTTCGAAGGCGACCGGCACGCCCGGCTCCGGCTGGTGCGCGGCGTGAAGAACCGGTACGGGGCCACCGACGAGGTCGG
CTGCTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCTTCCGGGCTCTTCCTCACCCGCCGCGCCGAGGCCG
TGCCCGGCACCTGCCTGACGGTGACGCTGGAGGGCCGCCGCCCGCTGGTCGCCGAAGTGCAGGCGCTGACCGTCGACTCG
CAGATCCCTTCGCCGCGCCGCACCACCTCCGGCCTGGAGACCTCGCGGGTGTCGATGATGCTGGCCGTGCTGGAGCAGCG
CGGCCGGATCAGCGCGCTGGGCAAGCGCGACATCTACAGCGCCACGGTCGGCGGCGTGAAGCTGTCCGAGCCCGCCGCGG
ACCTCGCCGTGGCCCTCGCGCTGGCCAGCGCCGCCAGCGACACCCCGCTGCCCAAGAACCTGGTGGCGATCGGCGAGGTC
GGGCTGGCGGGCGAGGTCAGGCGGGTGACGGGCGTGCAGCGGCGGCTGGCGGAGGCGGCCCGGCTGGGCTTCACGCACGC
GCTGGTCCCGGGCGATCCCGGCAGGATCCCGGAGGGGATGCGCGTTCAGGAAGTGGCGGACATAGGGGACGCGCTCCGGG
TGCTGCCCCGGCGCGTACGCCGGGAGGCCCCACGGGAGGAGGTCGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(80-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.178

0.423
  radA Streptococcus pneumoniae Rx1

42.444

95.541

0.406
  radA Streptococcus pneumoniae D39

42.444

95.541

0.406
  radA Streptococcus pneumoniae R6

42.444

95.541

0.406
  radA Streptococcus pneumoniae TIGR4

42.444

95.541

0.406
  radA Streptococcus mitis SK321

43.662

90.446

0.395
  radA Streptococcus mitis NCTC 12261

43.662

90.446

0.395