Detailed information    

insolico Bioinformatically predicted

Overview


Name   disA   Type   Machinery gene
Locus tag   Q3Y56_RS19735 Genome accession   NZ_CP130713
Coordinates   4582920..4583978 (-) Length   352 a.a.
NCBI ID   WP_304465693.1    Uniprot ID   -
Organism   Streptomyces sp. XD-27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 4577920..4588978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y56_RS19700 (Q3Y56_19700) sigJ 4578252..4579163 (+) 912 WP_304463201.1 RNA polymerase sigma factor SigJ -
  Q3Y56_RS19705 (Q3Y56_19705) - 4579160..4579555 (+) 396 WP_304465913.1 hypothetical protein -
  Q3Y56_RS19710 (Q3Y56_19710) - 4579497..4579724 (-) 228 Protein_3907 hypothetical protein -
  Q3Y56_RS19715 (Q3Y56_19715) - 4579889..4580113 (+) 225 WP_304463202.1 hypothetical protein -
  Q3Y56_RS19720 (Q3Y56_19720) - 4580336..4581064 (+) 729 WP_304463203.1 response regulator transcription factor -
  Q3Y56_RS19725 (Q3Y56_19725) - 4581133..4581771 (-) 639 WP_304463204.1 phosphatase PAP2 family protein -
  Q3Y56_RS19730 (Q3Y56_19730) - 4581947..4582765 (+) 819 WP_304463205.1 hypothetical protein -
  Q3Y56_RS19735 (Q3Y56_19735) disA 4582920..4583978 (-) 1059 WP_304465693.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  Q3Y56_RS19740 (Q3Y56_19740) radA/sms 4584113..4585528 (-) 1416 WP_304463206.1 DNA repair protein RadA Machinery gene
  Q3Y56_RS19745 (Q3Y56_19745) - 4586068..4587654 (+) 1587 WP_304463207.1 sigma-70 family RNA polymerase sigma factor -
  Q3Y56_RS19750 (Q3Y56_19750) - 4587823..4588641 (-) 819 WP_304463208.1 hypothetical protein -

Sequence


Protein


Download         Length: 352 a.a.        Molecular weight: 38302.13 Da        Isoelectric Point: 5.1043

>NTDB_id=786866 Q3Y56_RS19735 WP_304465693.1 4582920..4583978(-) (disA) [Streptomyces sp. XD-27]
MRASLSAVAPGTALRDGLERVVRGNTGGLIVLGMDKTVEPLCTGGFVLDVEFSATRLRELCKLDGALILDKDITKIVRAG
VQLVPDASIPTEETGTRHRTAQRVSIQTKFPVVSVSQSMRLIALYVDGERRVLEESAAILSRANQALATLERYKLRLDEV
AGTLSALEIEDLVTVRDVTAVAQRLEMVRRIATEIAEYVVELGTDGRLLSLQLDELIAGVEPERELVIRDYVPEPTAKRT
RTVAEALAELDRLSHAELLELPIVARALGYSGSPETLDSAVSPRGFRLLAKVPRLPGAIIERLVEHFGGLQKLLAASVDD
LQTVDGVGEARARSVREGLSRLAESSILERYV

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=786866 Q3Y56_RS19735 WP_304465693.1 4582920..4583978(-) (disA) [Streptomyces sp. XD-27]
ATGCGCGCCTCGCTGAGCGCCGTCGCACCCGGCACGGCGCTGCGGGACGGGCTGGAGCGCGTCGTGCGCGGCAACACGGG
CGGCCTCATCGTCCTGGGCATGGACAAGACCGTCGAGCCCCTGTGTACCGGCGGCTTCGTCCTGGACGTCGAGTTCTCCG
CGACCCGGCTGCGCGAGCTGTGCAAGCTGGACGGCGCGCTGATCCTCGACAAGGACATCACCAAGATCGTGCGGGCGGGC
GTCCAGCTGGTCCCGGACGCGTCCATCCCCACCGAGGAGACCGGCACCCGGCACCGCACCGCGCAGCGCGTCTCCATCCA
GACCAAGTTCCCGGTCGTCTCCGTCAGCCAGTCGATGCGGCTGATCGCGCTCTACGTGGACGGGGAGCGGCGCGTCCTGG
AGGAGTCGGCGGCCATCCTGTCCCGCGCCAACCAGGCGCTGGCGACGCTGGAGCGGTACAAGCTGCGGCTGGACGAGGTG
GCGGGCACGCTGTCCGCGCTCGAGATCGAGGACCTCGTCACCGTCCGGGACGTGACGGCGGTGGCGCAGCGCCTGGAGAT
GGTGCGCCGGATCGCCACGGAGATCGCCGAGTACGTGGTCGAGCTGGGCACCGACGGCCGCCTCCTCTCCCTCCAGCTGG
ACGAGTTGATCGCGGGCGTGGAGCCCGAGCGTGAGCTGGTCATCCGCGACTACGTGCCGGAGCCGACCGCCAAGCGCACC
CGCACGGTCGCGGAGGCGCTGGCGGAACTGGACCGGCTCAGCCACGCCGAGCTGCTCGAACTGCCCATCGTGGCGCGGGC
CCTGGGCTACAGCGGCTCGCCCGAGACCCTCGACTCGGCGGTCTCGCCGCGCGGATTCCGGCTGCTGGCCAAGGTGCCGC
GGCTGCCGGGCGCGATCATCGAGCGGCTGGTGGAGCACTTCGGCGGCCTGCAGAAGCTGCTGGCAGCGAGCGTGGACGAC
CTCCAGACGGTCGACGGGGTGGGCGAGGCGCGCGCCCGGTCGGTGCGTGAGGGACTCTCCCGGCTCGCCGAATCCTCGAT
TCTCGAACGCTACGTGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  disA Bacillus subtilis subsp. subtilis str. 168

47.11

98.295

0.463