Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q5R05_RS08715 Genome accession   NZ_CP130703
Coordinates   1704732..1705280 (-) Length   182 a.a.
NCBI ID   WP_014974956.1    Uniprot ID   K0DED0
Organism   Leuconostoc carnosum strain AMS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1699732..1710280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5R05_RS08695 (Q5R05_08695) dnaB 1700167..1701633 (-) 1467 WP_135197859.1 replicative DNA helicase -
  Q5R05_RS08700 (Q5R05_08700) rplI 1701635..1702087 (-) 453 WP_019040144.1 50S ribosomal protein L9 -
  Q5R05_RS08705 (Q5R05_08705) - 1702139..1704166 (-) 2028 WP_135197860.1 DHH family phosphoesterase -
  Q5R05_RS08710 (Q5R05_08710) rpsR 1704411..1704695 (-) 285 WP_014974955.1 30S ribosomal protein S18 -
  Q5R05_RS08715 (Q5R05_08715) ssb 1704732..1705280 (-) 549 WP_014974956.1 single-stranded DNA-binding protein Machinery gene
  Q5R05_RS08720 (Q5R05_08720) rpsF 1705314..1705610 (-) 297 WP_014974957.1 30S ribosomal protein S6 -
  Q5R05_RS08725 (Q5R05_08725) - 1705797..1707245 (-) 1449 WP_135197861.1 Sapep family Mn(2+)-dependent dipeptidase -
  Q5R05_RS08730 (Q5R05_08730) - 1707300..1708124 (-) 825 WP_135197862.1 energy-coupling factor transporter transmembrane protein EcfT -
  Q5R05_RS08735 (Q5R05_08735) - 1708179..1709873 (-) 1695 WP_135197863.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19751.36 Da        Isoelectric Point: 4.5280

>NTDB_id=786656 Q5R05_RS08715 WP_014974956.1 1704732..1705280(-) (ssb) [Leuconostoc carnosum strain AMS1]
MINRVVLIGRLTRDVELRYTQSGTAVGTFSLAVNRQFTNQAGEREADFINAVIWRKAAENFSNFTGKGALVAVEGRLQTR
NYENNQGQRVYVTEVVVDNFSLLESRAESEKRRSQNGSSTPSNNGGNFGAPSDNSFSGVDPFASANQNSNSQSTATTQND
APNPFAASGNTEIDISDDDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=786656 Q5R05_RS08715 WP_014974956.1 1704732..1705280(-) (ssb) [Leuconostoc carnosum strain AMS1]
ATGATTAATCGAGTAGTATTGATTGGGCGATTGACCCGTGACGTGGAATTGCGCTATACGCAATCAGGTACAGCTGTTGG
GACATTTAGTCTTGCAGTTAACCGCCAATTTACTAACCAAGCTGGTGAGCGGGAAGCTGACTTTATTAACGCTGTTATCT
GGCGTAAAGCAGCTGAAAATTTCTCGAATTTTACTGGTAAAGGTGCTTTGGTAGCCGTTGAAGGCCGATTGCAAACAAGA
AATTATGAAAATAATCAAGGTCAACGTGTTTACGTTACCGAAGTTGTTGTAGATAATTTCTCATTGCTTGAATCACGCGC
TGAAAGTGAGAAACGTCGTTCACAAAACGGCTCATCAACACCATCTAACAATGGTGGCAACTTTGGTGCACCAAGTGATA
ATTCATTTAGTGGTGTTGATCCATTTGCAAGTGCGAACCAAAATTCAAACTCACAATCGACAGCAACGACACAAAATGAT
GCACCTAACCCATTTGCGGCTAGTGGCAATACAGAAATTGATATATCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DED0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.516

100

0.659
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.747

100

0.527