Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   Q5R05_RS08185 Genome accession   NZ_CP130703
Coordinates   1600552..1601508 (-) Length   318 a.a.
NCBI ID   WP_135197795.1    Uniprot ID   -
Organism   Leuconostoc carnosum strain AMS1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1595552..1606508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5R05_RS08165 (Q5R05_08165) - 1596131..1596970 (+) 840 WP_305068443.1 SHOCT domain-containing protein -
  Q5R05_RS08170 (Q5R05_08170) - 1597146..1597907 (+) 762 WP_305068444.1 glycerophosphodiester phosphodiesterase family protein -
  Q5R05_RS08175 (Q5R05_08175) - 1598045..1599499 (+) 1455 WP_305068445.1 recombinase family protein -
  Q5R05_RS08180 (Q5R05_08180) - 1599573..1600610 (-) 1038 WP_135198199.1 type II secretion system F family protein -
  Q5R05_RS08185 (Q5R05_08185) comGA 1600552..1601508 (-) 957 WP_135197795.1 competence type IV pilus ATPase ComGA Machinery gene
  Q5R05_RS08190 (Q5R05_08190) - 1601606..1602958 (-) 1353 WP_014974864.1 glucose-6-phosphate isomerase -
  Q5R05_RS08195 (Q5R05_08195) - 1603082..1603783 (-) 702 WP_135197796.1 glucosamine-6-phosphate deaminase -
  Q5R05_RS08200 (Q5R05_08200) - 1603912..1605189 (-) 1278 WP_135197797.1 D-alanyl-D-alanine carboxypeptidase family protein -
  Q5R05_RS08205 (Q5R05_08205) - 1605176..1606282 (-) 1107 WP_014974867.1 cell wall metabolism sensor histidine kinase WalK -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 36340.93 Da        Isoelectric Point: 6.3080

>NTDB_id=786649 Q5R05_RS08185 WP_135197795.1 1600552..1601508(-) (comGA) [Leuconostoc carnosum strain AMS1]
MNDILEAAIEQKVNDIYLLPTEDQQYVIKFHLDGQAVTFKQISEINAQTMISALKYRAKMNISERRRPQLGRFQNDEIWL
RVSTVGDFLNRETVVLRLIYPQRQTQNWLVSQQFEAIQTALPSAGLFLISGPTGSGKTTTLYRLLDQLADDKLVLTIEDP
VEIQQPKFVQLQVNEDAGIYYDELIKVALRHRPEILLVGEIRDKKTAQAAVQAALSGHLVLSTVHAMSARDVIVRLQDLG
VDHMKLMAALAGVVYQRLLPTNNHQQAAIMDMLNDHLLERVMRGDEIPKFSKKWQEVLQHAMEQQIISQETCEIYQKL

Nucleotide


Download         Length: 957 bp        

>NTDB_id=786649 Q5R05_RS08185 WP_135197795.1 1600552..1601508(-) (comGA) [Leuconostoc carnosum strain AMS1]
ATGAATGATATTTTAGAGGCAGCTATTGAACAAAAAGTAAATGATATTTATCTTTTACCCACCGAGGATCAACAATATGT
GATTAAGTTTCATCTTGATGGTCAAGCAGTGACATTTAAACAAATATCTGAAATAAATGCGCAAACGATGATTTCAGCGC
TTAAATATCGTGCCAAAATGAATATTTCAGAACGCAGGCGACCACAATTAGGTCGTTTTCAAAATGATGAGATTTGGCTA
CGTGTATCTACTGTTGGTGATTTTTTGAACCGAGAAACAGTTGTTTTGCGACTTATTTATCCGCAAAGGCAGACACAAAA
TTGGCTCGTTTCTCAACAGTTTGAAGCAATACAGACAGCATTGCCGAGTGCAGGTCTATTTTTAATTTCTGGGCCAACAG
GGTCTGGGAAAACAACAACTCTTTATCGTCTATTAGACCAATTAGCAGATGATAAACTCGTATTGACAATTGAAGATCCA
GTTGAAATTCAACAACCAAAATTTGTGCAATTACAAGTTAATGAAGATGCTGGTATTTATTATGATGAGTTAATCAAAGT
AGCACTACGACATCGACCAGAAATTTTATTAGTAGGTGAAATTCGTGATAAGAAAACGGCGCAGGCAGCCGTTCAAGCCG
CACTAAGTGGGCATTTGGTATTAAGTACTGTGCATGCTATGTCAGCACGTGATGTTATTGTACGGTTACAGGATCTAGGC
GTCGATCATATGAAACTAATGGCGGCATTGGCTGGTGTTGTTTATCAACGTTTATTGCCAACTAACAACCATCAACAAGC
AGCCATCATGGATATGCTCAATGATCATCTACTTGAACGTGTTATGCGTGGTGATGAGATTCCTAAATTTTCAAAAAAAT
GGCAGGAGGTGTTACAACATGCAATGGAACAGCAAATTATTTCGCAAGAAACATGTGAAATCTATCAAAAGCTTTAG

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(4-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Latilactobacillus sakei subsp. sakei 23K

44.28

85.22

0.377
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

41.053

89.623

0.368
  comGA Streptococcus mutans UA140

38.796

94.025

0.365
  comGA Streptococcus mutans UA159

38.796

94.025

0.365