Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   Q3Y68_RS16565 Genome accession   NZ_CP130681
Coordinates   3760391..3761800 (+) Length   469 a.a.
NCBI ID   WP_102932190.1    Uniprot ID   A0ABW8BNC8
Organism   Streptomyces sp. HUAS CX7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3755391..3766800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y68_RS16550 (Q3Y68_16550) - 3755864..3756796 (-) 933 WP_102927374.1 Ppx/GppA phosphatase family protein -
  Q3Y68_RS16555 (Q3Y68_16555) - 3756868..3757698 (+) 831 WP_165286667.1 hypothetical protein -
  Q3Y68_RS16560 (Q3Y68_16560) - 3758053..3759843 (-) 1791 WP_233646018.1 hypothetical protein -
  Q3Y68_RS16565 (Q3Y68_16565) radA/sms 3760391..3761800 (+) 1410 WP_102932190.1 DNA repair protein RadA Machinery gene
  Q3Y68_RS16570 (Q3Y68_16570) disA 3761882..3763006 (+) 1125 WP_030404779.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  Q3Y68_RS16575 (Q3Y68_16575) - 3763026..3763868 (-) 843 WP_233646019.1 hypothetical protein -
  Q3Y68_RS16580 (Q3Y68_16580) - 3764027..3764953 (+) 927 WP_125629511.1 A/G-specific adenine glycosylase -
  Q3Y68_RS16585 (Q3Y68_16585) - 3765252..3765785 (+) 534 WP_003975479.1 SigE family RNA polymerase sigma factor -
  Q3Y68_RS16590 (Q3Y68_16590) - 3765773..3766450 (+) 678 WP_176154385.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49748.84 Da        Isoelectric Point: 7.7528

>NTDB_id=786548 Q3Y68_RS16565 WP_102932190.1 3760391..3761800(+) (radA/sms) [Streptomyces sp. HUAS CX7]
MAARTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPADPGKVPDGMKVLEVADMGDALRVLPRSRRREAPREEGDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=786548 Q3Y68_RS16565 WP_102932190.1 3760391..3761800(+) (radA/sms) [Streptomyces sp. HUAS CX7]
ATGGCTGCCCGTACGAAGTCCGCCAAGGAACGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCATGGGGCACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGTACGACCACGCCGGGGC
GCGTCACGACCTCCGCGCTGCCCATCGGCCAGGTGGACGGCCGGCAGGCGACCGCCCGTTCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGGGCCGTGGTGCTCGTCGCGGGAGAGCCCGGCGTCGGCAAGTCCACGCT
GCTCCTCGACGTGGCGGCCAAGTCCGCGAGCGACGAGCACCGGACGCTGTACGTCACCGGTGAGGAGTCGGCCAGCCAGG
TGCGGCTGCGGGCCGACCGGATCCACGCCATCGACGACCATCTGTATCTCGCCGCCGAGACAGACCTCGCGGCGGTGCTC
GGGCACCTGGACGCCGTCAAGCCGTCGCTGCTGATCCTGGACTCCGTGCAGACCGTCGCCTCGCCCGAGATCGACGGCGC
CCCGGGCGGCATGGCGCAGGTGCGGGAGGTGGCAGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGCTGC
TGGTGGGCCACGTCACCAAGGACGGCGCCATCGCGGGCCCGCGGCTGCTTGAGCACCTCGTGGACGTCGTCCTGCATTTC
GAGGGCGACCGGCATGCGCGGCTGAGGCTGGTGCGGGGGGTCAAGAACCGGTACGGGACGACCGACGAGGTCGGCTGTTT
CGAGCTGCACGACGAAGGGATCACGGGGCTCGCCGATCCCAGCGGGCTGTTCCTCACCCGGCGGGCCGAGCCGGTGCCCG
GTACCTGTCTGACCGTCACCCTGGAGGGGCGGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCGCAGATC
CCGTCGCCCCGGCGCACCACCTCGGGGCTCGAGACCTCGCGGGTGTCGATGATGCTGGCCGTGCTGGAGCAGCGCGGGCG
CATCAGCGCCCTGGGCAAGAGGGACATCTACAGCGCGACGGTGGGCGGGGTGAAGCTCTCCGAGCCGGCCGCCGACCTCG
CCGTCGCGCTGGCGTTGGCGAGTGCGGCCAGTGACACTCCGCTGCCCAAGAACCTCGTGGCGATCGGCGAGGTCGGGCTC
GCCGGAGAGGTGAGACGGGTCACGGGCGTGCAGCGCAGGCTCTCCGAGGCGCACCGGCTGGGCTTCACGCACGCCCTGGT
ACCGGCCGATCCGGGGAAGGTCCCTGACGGCATGAAGGTCCTGGAAGTCGCGGACATGGGGGACGCCCTGCGGGTGCTTC
CGCGCTCGCGTCGCCGAGAGGCCCCACGGGAGGAGGGGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412
  radA Streptococcus mitis NCTC 12261

44.366

90.832

0.403
  radA Streptococcus mitis SK321

44.366

90.832

0.403