Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   Q3Y68_RS10320 Genome accession   NZ_CP130681
Coordinates   2390393..2392621 (-) Length   742 a.a.
NCBI ID   WP_233645593.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS CX7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2385393..2397621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y68_RS10290 (Q3Y68_10290) rnc 2386177..2387007 (-) 831 WP_161377550.1 ribonuclease III -
  Q3Y68_RS10295 (Q3Y68_10295) rpmF 2387015..2387188 (-) 174 WP_003951102.1 50S ribosomal protein L32 -
  Q3Y68_RS10300 (Q3Y68_10300) - 2387191..2387844 (-) 654 WP_102932897.1 DUF177 domain-containing protein -
  Q3Y68_RS10305 (Q3Y68_10305) - 2387989..2389110 (-) 1122 WP_233645592.1 ATP synthase F0 subunit B -
  Q3Y68_RS10310 (Q3Y68_10310) coaD 2389244..2389723 (-) 480 WP_102932899.1 pantetheine-phosphate adenylyltransferase -
  Q3Y68_RS10315 (Q3Y68_10315) rsmD 2389750..2390337 (-) 588 WP_212731310.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  Q3Y68_RS10320 (Q3Y68_10320) recG 2390393..2392621 (-) 2229 WP_233645593.1 ATP-dependent DNA helicase RecG Machinery gene
  Q3Y68_RS10325 (Q3Y68_10325) - 2392683..2394452 (-) 1770 WP_212731308.1 DAK2 domain-containing protein -
  Q3Y68_RS10330 (Q3Y68_10330) rpmB 2394719..2394904 (+) 186 WP_003993230.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 80348.94 Da        Isoelectric Point: 6.3380

>NTDB_id=786533 Q3Y68_RS10320 WP_233645593.1 2390393..2392621(-) (recG) [Streptomyces sp. HUAS CX7]
MDLVPALQEPLKKVLGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASSKA
PRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLRGDIEGEETVESWAGA
LIPLYPATAKLESWKLAKAIQTVLPSAQEAVDPLPDSLREGRGLVSLPEALLKIHRPHTKADIEDARARLKWDEAFVLQV
ALARRRHAETQLPAVPRKPGPDGLLTAFDDRLPFTLTDGQQRVSREIFDDLATDHPMHRLLQGEVGSGKTLVALRAMLAV
VDSGGQAVMLAPTEVLAQQHHRSVVEMMGELAEGGMLGGAEHATKVVLLTGSMGAAARRHALLDLATGEAGIVIGTHALI
EDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPA
ADKPHFLARAWERVREEVSNGHQAYVVCPRIGDEDDDPKKGAKKKAAQGEPPEGDAEKRPPLAVLDVAEQLAKGPLQGLK
VEVLHGRMQPDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSE
MPEASAARQRLNAVASTRDGFELSRIDLEQRREGDVLGQAQSGARTSLRVLAVIEDEEIIAEARQEAAAVVAADPELTGL
PGLRTALEALLDDEREQYLEKG

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=786533 Q3Y68_RS10320 WP_233645593.1 2390393..2392621(-) (recG) [Streptomyces sp. HUAS CX7]
ATGGATCTCGTGCCCGCACTGCAAGAACCCCTGAAGAAGGTGCTCGGCCCCGCCACCGCGAAGGTGATGGCCGAGCACCT
CGGCCTGCACACCGTCGGCGACCTCCTCCACCACTACCCCCGGAGATACGAGGAGCGCGGCCAGCTCACCCACCTCGCCG
ACCTGCCCATGGACGAGCACGTCACCGTGGTCGCCCAGGTCGCCGACGCCCGCCTGCACACCTTCGCCTCGTCGAAGGCC
CCACGCGGCAAGGGCCAGCGCCTCGAGGTGACCATCACGGACGGCAGCGGCCGCCTCCAACTGGTCTTCTTTGGCAACGG
CGTGCACAAGCCCCACAAGGAACTCCTGCCGGGCACCCGCGCGATGTTCGCCGGCAAGGTCTCCGTCTTCAACCGCCGCC
TGCAACTGGCGCATCCGGCGTACGAGTTGCTGCGCGGCGACATCGAGGGCGAGGAGACCGTCGAGTCCTGGGCGGGCGCC
CTCATCCCCCTCTACCCGGCCACCGCCAAGCTGGAGTCCTGGAAGCTCGCCAAGGCGATCCAGACGGTGCTGCCCAGCGC
CCAGGAGGCCGTCGACCCGCTCCCCGACTCCCTGCGCGAGGGCCGGGGCCTGGTCTCCCTGCCCGAGGCCCTGCTCAAGA
TCCACCGCCCGCACACCAAGGCCGACATCGAGGACGCCCGCGCCCGCCTGAAGTGGGACGAGGCATTCGTCCTCCAGGTC
GCCCTCGCCCGCCGCCGCCACGCCGAGACCCAACTCCCCGCCGTCCCCAGGAAGCCCGGCCCGGACGGCCTGCTCACCGC
CTTCGACGACCGTCTCCCCTTCACCCTCACCGACGGCCAGCAGCGGGTCTCCCGCGAGATCTTCGACGACCTCGCCACCG
ACCACCCGATGCACCGGCTGCTCCAGGGCGAGGTGGGCAGCGGCAAGACCCTGGTCGCCCTGCGCGCCATGCTCGCCGTC
GTCGACTCCGGCGGACAGGCCGTGATGCTGGCGCCCACCGAGGTGCTCGCCCAGCAGCACCACCGGTCGGTCGTCGAGAT
GATGGGCGAGCTGGCCGAGGGAGGGATGCTCGGCGGCGCCGAGCACGCCACCAAGGTGGTGCTGCTCACCGGCTCCATGG
GTGCCGCCGCCCGCCGGCACGCCCTGCTCGACCTGGCCACCGGCGAGGCGGGCATCGTCATCGGCACCCACGCGCTGATC
GAGGACAAGGTCCAGTTCCACGACCTCGGCCTGGTCGTCGTCGACGAGCAGCACCGCTTCGGCGTCGAGCAGCGCGACGC
CCTGCGCGGCAAGGGCAAGCAGCCCCCGCACCTGCTCGTCATGACCGCCACACCCATCCCGCGCACCGTCGCCATGACCG
TCTTCGGCGACCTGGAGACCTCGGTCCTGGACCAGCTCCCCGCCGGCCGGTCCCCGATCGCCAGCCACGTCGTCCCGGCC
GCCGACAAACCCCACTTCCTCGCCCGGGCCTGGGAACGGGTCCGCGAGGAGGTGTCGAACGGCCACCAGGCCTACGTCGT
CTGCCCGCGCATCGGCGACGAGGACGACGACCCCAAGAAGGGCGCGAAGAAGAAGGCCGCACAGGGCGAGCCGCCCGAGG
GCGACGCCGAGAAGCGCCCCCCGCTCGCCGTCCTCGATGTGGCCGAGCAGCTCGCCAAGGGGCCGCTCCAGGGCCTCAAG
GTGGAGGTCCTGCACGGCCGGATGCAGCCCGACGACAAGGACGCGGTCATGCGCCGCTTCGCCGCCGGGGAGACCGACGT
CCTGGTCGCCACCACCGTCATCGAGGTCGGCGTCAACGTCCCCAACGCCACCGCGATGGTGATCATGGACGCCGACCGCT
TCGGCGTCTCCCAGCTCCACCAGCTGCGCGGCCGGGTCGGCCGCGGCTCCGCCCCCGGCCTGTGCCTGCTGGTCAGCGAG
ATGCCCGAGGCGAGCGCGGCCCGGCAGCGGCTGAACGCCGTCGCGAGCACCCGCGACGGCTTCGAGCTCTCCCGCATCGA
CCTCGAACAGCGCCGCGAGGGCGACGTCCTCGGCCAGGCCCAGTCCGGTGCCCGCACCTCCCTGCGGGTGCTCGCCGTCA
TCGAGGACGAGGAGATCATCGCGGAGGCGAGACAGGAGGCCGCGGCCGTCGTGGCCGCCGATCCGGAGCTGACCGGCCTG
CCGGGTCTGCGCACGGCCCTGGAGGCACTGCTGGACGACGAGCGGGAGCAGTACCTGGAGAAGGGCTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(657-718)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)

DEAD/DEAH box helicase (DEAD)

(298-450)

Helicase conserved C-terminal domain (Helicase_C)

(554-629)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.81

95.148

0.369
  recG Bacillus subtilis subsp. subtilis str. 168

38.122

94.744

0.361