Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   Q4437_RS09535 Genome accession   NZ_CP130651
Coordinates   2040914..2041558 (-) Length   214 a.a.
NCBI ID   WP_005386783.1    Uniprot ID   Q87NC3
Organism   Vibrio parahaemolyticus strain HZ     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2035914..2046558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4437_RS09525 (Q4437_09525) pgsA 2038476..2039033 (-) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q4437_RS09530 (Q4437_09530) uvrC 2039080..2040912 (-) 1833 WP_011105992.1 excinuclease ABC subunit UvrC Machinery gene
  Q4437_RS09535 (Q4437_09535) letA 2040914..2041558 (-) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  Q4437_RS09540 (Q4437_09540) - 2042058..2044421 (+) 2364 WP_005489176.1 DNA polymerase II -
  Q4437_RS09545 (Q4437_09545) - 2044418..2045185 (-) 768 WP_005488521.1 nucleotidyltransferase domain-containing protein -
  Q4437_RS09550 (Q4437_09550) yeiP 2045372..2045938 (+) 567 WP_005465079.1 elongation factor P-like protein YeiP -
  Q4437_RS09555 (Q4437_09555) - 2045941..2046261 (+) 321 WP_005465080.1 HI1450 family dsDNA-mimic protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23765.32 Da        Isoelectric Point: 5.6509

>NTDB_id=786383 Q4437_RS09535 WP_005386783.1 2040914..2041558(-) (letA) [Vibrio parahaemolyticus strain HZ]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEDAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMLMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=786383 Q4437_RS09535 WP_005386783.1 2040914..2041558(-) (letA) [Vibrio parahaemolyticus strain HZ]
TTGATTAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGACAGCGGTGAAGATGCAGTTAAATGGTGTCGCAGTAATCATGCTGACGTCGTTTTAATGG
ACATGAACATGCCTGGGATTGGCGGCTTGGAAGCCACCAAGAAAATTCTTCGCGTGAATCCAGATGTGAAAATCATCGTA
CTAACCGTTCATACGGAAAATCCGTTTCCAACCAAAGTGATGCAGGCTGGTGCTTCTGGTTATTTAACCAAAGGTGCAGG
GCCGGATGAAATGGTAAATGCAATTCGTGTGGTCAATAGTGGGCAGCGTTACATCTCTCCAGAGATAGCGCAGCAAATGG
CATTGAGCCAGTTCTCACCAGCCTCTGAAAACCCATTTAAAGATTTGTCCGAACGTGAACTGCAAATCATGCTTATGATC
ACGAAAGGTCAGAAAGTAACGGATATTTCTGAGCAACTTAACTTAAGTCCAAAGACAGTCAACAGCTACCGCTATCGACT
GTTTAGCAAGCTGGACATTAATGGTGACGTCGAGTTAACACACTTAGCGATTCGCCACGGAATGCTGGACACCGAGACCC
TTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87NC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.952

98.131

0.5
  letA Legionella pneumophila strain ERS1305867

50.952

98.131

0.5