Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   Q4437_RS02670 Genome accession   NZ_CP130651
Coordinates   582482..583210 (-) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain HZ     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 577482..588210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4437_RS02645 (Q4437_02645) trpR 577869..578180 (+) 312 WP_005497218.1 trp operon repressor -
  Q4437_RS02650 (Q4437_02650) yjjX 578229..578762 (-) 534 WP_021451172.1 inosine/xanthosine triphosphatase -
  Q4437_RS02655 (Q4437_02655) pheA 578787..579965 (-) 1179 WP_005468591.1 prephenate dehydratase -
  Q4437_RS02660 (Q4437_02660) raiA 580209..580535 (-) 327 WP_005468590.1 ribosome-associated translation inhibitor RaiA -
  Q4437_RS02665 (Q4437_02665) - 580866..582347 (-) 1482 WP_005477934.1 lytic transglycosylase F -
  Q4437_RS02670 (Q4437_02670) comL 582482..583210 (-) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  Q4437_RS02675 (Q4437_02675) rluD 583347..584324 (+) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  Q4437_RS02680 (Q4437_02680) pgeF 584326..585054 (+) 729 WP_005477884.1 peptidoglycan editing factor PgeF -
  Q4437_RS02685 (Q4437_02685) clpC 585202..587775 (+) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=786353 Q4437_RS02670 WP_005460312.1 582482..583210(-) (comL) [Vibrio parahaemolyticus strain HZ]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=786353 Q4437_RS02670 WP_005460312.1 582482..583210(-) (comL) [Vibrio parahaemolyticus strain HZ]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACTCATGAAAAAATGGACTGGGTACT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTGGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATTGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405