Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Q4V64_RS29895 Genome accession   NZ_CP130630
Coordinates   6626618..6628027 (-) Length   469 a.a.
NCBI ID   WP_124440170.1    Uniprot ID   -
Organism   Streptomyces sp. NL15-2K     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6621618..6633027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4V64_RS29870 (Q4V64_29865) - 6621979..6622989 (+) 1011 WP_253266949.1 sensor histidine kinase -
  Q4V64_RS29875 (Q4V64_29870) - 6622986..6623645 (+) 660 WP_124440174.1 response regulator transcription factor -
  Q4V64_RS29880 (Q4V64_29875) - 6623649..6624290 (-) 642 WP_172629201.1 phosphatase PAP2 family protein -
  Q4V64_RS29885 (Q4V64_29880) - 6624466..6625314 (+) 849 WP_124440172.1 hypothetical protein -
  Q4V64_RS29890 (Q4V64_29885) disA 6625412..6626536 (-) 1125 WP_124440171.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  Q4V64_RS29895 (Q4V64_29890) radA 6626618..6628027 (-) 1410 WP_124440170.1 DNA repair protein RadA Machinery gene
  Q4V64_RS29900 (Q4V64_29895) - 6628269..6630041 (+) 1773 WP_124440169.1 hypothetical protein -
  Q4V64_RS29905 (Q4V64_29900) - 6630098..6630964 (-) 867 WP_124440168.1 hypothetical protein -
  Q4V64_RS29910 (Q4V64_29905) - 6631072..6632001 (+) 930 WP_124440167.1 Ppx/GppA phosphatase family protein -
  Q4V64_RS29915 (Q4V64_29910) - 6632193..6633014 (+) 822 WP_124440166.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49777.94 Da        Isoelectric Point: 8.0102

>NTDB_id=786284 Q4V64_RS29895 WP_124440170.1 6626618..6628027(-) (radA) [Streptomyces sp. NL15-2K]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTSSALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPVGMKVLEVADIGDALRVLPRSRRREAPRDEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=786284 Q4V64_RS29895 WP_124440170.1 6626618..6628027(-) (radA) [Streptomyces sp. NL15-2K]
ATGGCTGCCCGTACCAAGACCACGAAGGACCGACCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCGAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCATGGGGCACGGTCGAGGAGTACGGCGCGCCCGCTGTCCGTACGACGACGCCGGGGC
GCGTCACCAGCTCCGCCCTGCCCATCGGCCAGGTCGACGGCCGACAGGCCACCGCCCGCTCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGGGGGCTGGTGCCCGGCGCGGTCGTCCTCGTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACCCT
GCTCCTGGACGTGGCGGCCAAGGCGGCCAGTGACGAACACCGCACGCTCTATGTGACCGGCGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGGATCAAGGCCATCGACGATCACCTGTATCTCGCCGCCGAGACCGATCTGGCCGCCGTGCTC
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTGATCCTCGACTCGGTGCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
CCCCGGCGGCATGGCACAGGTGCGCGAGGTGGCGGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCCACGCTCC
TTGTGGGCCATGTCACCAAGGACGGCGCCATCGCGGGCCCGCGTCTGCTGGAGCACCTCGTGGACGTCGTCCTGCACTTC
GAGGGCGACCGGCACGCCCGCCTCAGGCTCGTGCGGGGCGTCAAGAACCGCTACGGCACCACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCACCGACCCGAGCGGCCTGTTCCTGACCCGGCGTGCCGAACCGGTGCCCG
GCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTGGCCGAGGTCCAGGCGCTCACCGTCGACTCCCAGATC
CCCAGCCCCCGGCGGACCACGTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCCCTGGGCAAAAGGGACATCTACTCCGCGACGGTCGGCGGTGTGAAGTTGTCGGAGCCTGCCGCGGACCTGG
CCGTCGCCCTCGCCCTGGCGAGCGCGGCGAGCGACACACCTCTGCCCAAGAACCTCGTCGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGCCGGCTCGCCGAAGCACACCGTCTGGGCTTCACTCACGCCCTGGT
GCCGGGCGATCCGGGCAAGATCCCGGTCGGCATGAAGGTTCTGGAAGTCGCGGACATAGGGGACGCCCTGAGAGTCCTTC
CACGCTCGCGTCGCAGAGAGGCCCCACGGGACGAGGAAGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

42.826

96.588

0.414
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus mitis NCTC 12261

44.131

90.832

0.401