Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LLID5_RS06185 Genome accession   NZ_AP025701
Coordinates   1276575..1277630 (-) Length   351 a.a.
NCBI ID   WP_251918199.1    Uniprot ID   -
Organism   Lactococcus lactis strain ID-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1271575..1282630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS06170 (LLID5_12120) trmFO 1273263..1274606 (+) 1344 WP_003131150.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LLID5_RS06175 (LLID5_12130) xerS 1274651..1275721 (-) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  LLID5_RS06180 (LLID5_12140) - 1276204..1276491 (-) 288 WP_058219915.1 hypothetical protein -
  LLID5_RS06185 (LLID5_12150) xerS 1276575..1277630 (-) 1056 WP_251918199.1 tyrosine recombinase XerS Machinery gene
  LLID5_RS06190 (LLID5_12160) - 1278387..1279208 (-) 822 WP_251918201.1 dihydrodipicolinate synthase family protein -
  LLID5_RS06195 (LLID5_12170) - 1279293..1280495 (-) 1203 WP_058218296.1 MFS transporter -
  LLID5_RS06200 (LLID5_12180) - 1280467..1281168 (-) 702 WP_251918203.1 phenylalanine--tRNA ligase beta subunit-related protein -
  LLID5_RS06205 (LLID5_12190) - 1281187..1281720 (-) 534 WP_058204436.1 GNAT family N-acetyltransferase -
  LLID5_RS06210 (LLID5_12200) - 1281721..1282176 (-) 456 WP_058218298.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40527.14 Da        Isoelectric Point: 9.4065

>NTDB_id=78625 LLID5_RS06185 WP_251918199.1 1276575..1277630(-) (xerS) [Lactococcus lactis strain ID-5]
MSENHGYRYNVNKLMLEFPYYVNEFIQSKDTVPLSIASIYSYCLEFRKYLKWMSENNITNHANIKEITLKEMENVTKREL
EAFVLHERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKAFLEFVEHDYEQSVSNRARTSFKKNKVRDLAILSLFLSSGIRCAELVGINLNDLNLETGKVSVMRKEGKKDVVP
IAHFSHKYITDYYNARSSLNTDIEALFITDYNQTIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALSKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=78625 LLID5_RS06185 WP_251918199.1 1276575..1277630(-) (xerS) [Lactococcus lactis strain ID-5]
ATGTCAGAAAATCATGGTTATCGTTATAATGTAAATAAACTCATGCTTGAGTTTCCCTACTACGTCAATGAGTTTATCCA
GTCTAAGGACACTGTACCGCTGAGTATTGCCTCTATTTACTCTTACTGCCTAGAGTTCAGGAAATACTTGAAATGGATGA
GTGAAAATAACATAACGAACCATGCTAACATCAAAGAAATCACTTTGAAAGAAATGGAAAACGTAACGAAACGTGAGCTA
GAAGCCTTCGTACTTCACGAACGACTCCGTTTAGAATCAAAATGTGGCTCTAATACACATACATCAGCATTAAACCGTAC
CATTGCTGCAATAAAGAGCCTATATAATTATCTTTGTGAACAAACTGAGGATGAACACGGAAATACATACATGACTCGAA
ATGTCAGTCGTTTAATTCATATCCGAAAAAAGAGCGAAACCTTGCATTACCGTGCTGCTCAACTAGAAGGGAAACTATTC
CTAGGAGATGAAACCAAAGCCTTTTTAGAATTTGTTGAACATGACTATGAACAGTCTGTCAGTAACCGTGCAAGAACAAG
TTTCAAGAAAAATAAAGTCAGAGATTTAGCTATATTAAGTCTTTTTTTATCATCTGGAATACGTTGTGCGGAGCTTGTAG
GGATCAACCTTAACGATTTAAACCTTGAAACTGGGAAAGTAAGTGTGATGCGAAAAGAAGGCAAGAAAGATGTAGTGCCT
ATTGCTCATTTTTCGCATAAGTACATCACCGATTATTATAATGCAAGAAGTAGCTTAAATACTGATATAGAAGCTTTATT
TATTACTGACTATAACCAAACAATCAGAAAAATTTCTAATGCATCGATCAATAAGCTAGTCGCAAAGTATTCAGAAGCCT
ATAAAGTCCGTGTAACCCCTCATACTCTGAGGCATACTTTCGCAACGAGACTCTATAATGTCAGTCACTCTCAAGTCCTT
GTCAGCAATCAATTAGGGCATTCATCAACCAAACCAACTGAGTTATATACCCACATCGTCAGTGCTGAAGCTAAAGATGC
GTTAAGTAAGTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(186-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.559

99.43

0.453