Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   PGW99_RS10220 Genome accession   NZ_CP117520
Coordinates   2127739..2128182 (-) Length   147 a.a.
NCBI ID   WP_273777579.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2122739..2133182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS10185 - 2123110..2123565 (-) 456 WP_273777573.1 hemerythrin domain-containing protein -
  PGW99_RS10190 truB 2123844..2124749 (-) 906 WP_273777574.1 tRNA pseudouridine(55) synthase TruB -
  PGW99_RS10195 rplS 2124950..2125324 (-) 375 WP_273777575.1 50S ribosomal protein L19 -
  PGW99_RS10200 trmD 2125478..2126218 (-) 741 WP_273777576.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  PGW99_RS10205 rimM 2126264..2126812 (-) 549 WP_273777577.1 ribosome maturation factor RimM -
  PGW99_RS10210 rpsP 2126841..2127098 (-) 258 WP_004718284.1 30S ribosomal protein S16 -
  PGW99_RS10215 - 2127224..2127745 (-) 522 WP_273777578.1 type IV pilin protein -
  PGW99_RS10220 comE 2127739..2128182 (-) 444 WP_273777579.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  PGW99_RS10225 - 2128193..2131744 (-) 3552 WP_273777580.1 PilC/PilY family type IV pilus protein -
  PGW99_RS10230 - 2131758..2132534 (-) 777 WP_273777581.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16170.57 Da        Isoelectric Point: 9.7876

>NTDB_id=786235 PGW99_RS10220 WP_273777579.1 2127739..2128182(-) (comE) [Acinetobacter sp. GSS19]
MNKNGFTLIELMVVVVIVAIFAAIAIPSYQTYVRRAEASQAQQEMQKIAGLLERHKARNFSYKGYALITPTVRTYSFQLK
EVNMLNGTEVVKDLTATDASGRSWVLKATTTDAKNFNYLLTSSGVRCKNTTAVNVTYTGCGTGGEAW

Nucleotide


Download         Length: 444 bp        

>NTDB_id=786235 PGW99_RS10220 WP_273777579.1 2127739..2128182(-) (comE) [Acinetobacter sp. GSS19]
ATGAATAAAAATGGTTTCACCTTAATTGAACTGATGGTGGTGGTGGTGATTGTGGCAATTTTTGCCGCAATTGCCATACC
TTCCTATCAGACCTATGTTCGACGTGCAGAGGCATCTCAAGCCCAGCAGGAAATGCAGAAGATTGCAGGATTACTTGAAC
GGCACAAAGCGCGAAATTTTAGTTATAAAGGATATGCTTTAATAACTCCAACAGTCAGAACTTATAGTTTTCAACTAAAA
GAAGTCAATATGCTGAATGGTACTGAAGTGGTTAAAGATCTGACAGCGACCGATGCTTCAGGTCGTTCTTGGGTACTCAA
GGCGACGACAACGGATGCAAAAAACTTTAACTATTTGCTGACTAGTTCAGGAGTACGTTGTAAAAATACGACAGCAGTAA
ATGTGACTTACACTGGCTGTGGTACAGGAGGTGAAGCATGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(27-114)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

44.186

100

0.517
  pilY2 Acinetobacter baumannii D1279779

48.344

100

0.497