Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PGW99_RS01655 Genome accession   NZ_CP117520
Coordinates   337903..338532 (-) Length   209 a.a.
NCBI ID   WP_273778374.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332903..343532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS01620 mlaE 333278..334057 (+) 780 WP_273778365.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  PGW99_RS01625 - 334054..334737 (+) 684 WP_273778366.1 outer membrane lipid asymmetry maintenance protein MlaD -
  PGW99_RS01630 - 334758..335402 (+) 645 WP_273778368.1 ABC transporter substrate-binding protein -
  PGW99_RS01635 - 335419..335709 (+) 291 WP_273778369.1 STAS domain-containing protein -
  PGW99_RS01640 - 335753..336766 (-) 1014 WP_273778370.1 magnesium and cobalt transport protein CorA -
  PGW99_RS01645 - 336927..337505 (+) 579 WP_273778371.1 TIGR00730 family Rossman fold protein -
  PGW99_RS01650 - 337508..337897 (+) 390 WP_273778372.1 NUDIX domain-containing protein -
  PGW99_RS01655 comF 337903..338532 (-) 630 WP_273778374.1 ComF family protein Machinery gene
  PGW99_RS01660 recG 338519..340564 (-) 2046 WP_273778375.1 ATP-dependent DNA helicase RecG -
  PGW99_RS01665 - 340590..341411 (+) 822 WP_273778376.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24296.47 Da        Isoelectric Point: 8.7444

>NTDB_id=786214 PGW99_RS01655 WP_273778374.1 337903..338532(-) (comF) [Acinetobacter sp. GSS19]
MPTSRFDPLSWLRQQLPCILCGIAKQQQHAVCLDCWQQLPWLKQTVTRHELDIMVACHYHYPLDRIIQKFKYQQQLHYQR
LLAGCLSQLKLPRIQAIVPMPIATERLASRGFNQSVLLAKILAEQLNVPVWQPIQRQSQYAQKGLSRLERIEDIENQFQI
FHPQPIRYRRVLMLDDVVTTGSSLHALRIQLQSLGCEQIYACCVAAAEL

Nucleotide


Download         Length: 630 bp        

>NTDB_id=786214 PGW99_RS01655 WP_273778374.1 337903..338532(-) (comF) [Acinetobacter sp. GSS19]
ATGCCTACGTCTAGATTTGATCCTCTGAGCTGGTTACGACAGCAATTACCCTGTATTTTATGTGGGATTGCCAAACAACA
GCAGCATGCGGTCTGTCTGGACTGCTGGCAACAGTTACCCTGGCTGAAACAAACAGTGACCCGACATGAATTAGACATCA
TGGTGGCCTGTCATTATCACTATCCGCTGGATCGCATTATTCAGAAATTCAAATACCAGCAGCAACTCCACTATCAGAGA
CTACTCGCAGGCTGCTTATCGCAACTTAAACTGCCCCGTATACAAGCAATTGTACCGATGCCGATTGCCACTGAACGTTT
AGCCAGCCGTGGCTTTAACCAGTCCGTCTTACTCGCCAAAATTCTGGCCGAACAGCTGAATGTACCGGTCTGGCAACCTA
TTCAACGACAATCGCAATATGCACAAAAGGGCTTATCCCGTCTAGAACGGATCGAAGATATTGAAAACCAGTTTCAGATT
TTTCATCCTCAACCTATCCGCTACCGACGTGTACTGATGCTGGATGATGTCGTCACCACCGGGAGTTCGTTACATGCATT
GCGTATTCAATTACAGTCTCTGGGCTGTGAACAGATTTATGCCTGTTGTGTTGCGGCAGCCGAACTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

59.686

91.388

0.545
  comF Acinetobacter baumannii D1279779

59.686

91.388

0.545