Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PSC78_RS04410 | Genome accession | NZ_CP117508 |
| Coordinates | 862779..863306 (+) | Length | 175 a.a. |
| NCBI ID | WP_172761135.1 | Uniprot ID | - |
| Organism | Enterococcus faecalis strain CQJXZ21-077 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 853851..892246 | 862779..863306 | within | 0 |
Gene organization within MGE regions
Location: 853851..892246
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSC78_RS04330 (PSC78_04330) | - | 853851..854987 (-) | 1137 | WP_104681146.1 | site-specific integrase | - |
| PSC78_RS04335 (PSC78_04335) | - | 855113..855697 (-) | 585 | WP_104681145.1 | DUF4352 domain-containing protein | - |
| PSC78_RS04340 (PSC78_04340) | - | 855779..856036 (-) | 258 | Protein_838 | toxin | - |
| PSC78_RS04345 (PSC78_04345) | - | 856064..856801 (-) | 738 | WP_010716879.1 | DUF4950 domain-containing protein | - |
| PSC78_RS04350 (PSC78_04350) | - | 856823..857461 (-) | 639 | WP_010716880.1 | ImmA/IrrE family metallo-endopeptidase | - |
| PSC78_RS04355 (PSC78_04355) | - | 857476..857817 (-) | 342 | WP_010716881.1 | helix-turn-helix domain-containing protein | - |
| PSC78_RS04360 (PSC78_04360) | - | 858137..858313 (+) | 177 | WP_010716882.1 | helix-turn-helix transcriptional regulator | - |
| PSC78_RS04365 (PSC78_04365) | - | 858327..858665 (+) | 339 | WP_010716883.1 | DUF771 domain-containing protein | - |
| PSC78_RS04370 (PSC78_04370) | - | 858668..859381 (+) | 714 | WP_126268631.1 | Rha family transcriptional regulator | - |
| PSC78_RS04375 (PSC78_04375) | - | 859392..859577 (+) | 186 | WP_126268632.1 | hypothetical protein | - |
| PSC78_RS04380 (PSC78_04380) | - | 859589..859762 (+) | 174 | WP_010716885.1 | hypothetical protein | - |
| PSC78_RS04385 (PSC78_04385) | - | 859962..860285 (+) | 324 | WP_033600921.1 | hypothetical protein | - |
| PSC78_RS04390 (PSC78_04390) | - | 860278..860964 (+) | 687 | WP_050444148.1 | DUF1071 domain-containing protein | - |
| PSC78_RS04395 (PSC78_04395) | - | 860969..861610 (+) | 642 | WP_126268633.1 | putative HNHc nuclease | - |
| PSC78_RS04400 (PSC78_04400) | - | 861630..862481 (+) | 852 | WP_126268641.1 | DNA replication protein | - |
| PSC78_RS04405 (PSC78_04405) | - | 862481..862789 (+) | 309 | WP_002381633.1 | MazG-like family protein | - |
| PSC78_RS04410 (PSC78_04410) | ssb | 862779..863306 (+) | 528 | WP_172761135.1 | single-stranded DNA-binding protein | Machinery gene |
| PSC78_RS04415 (PSC78_04415) | - | 863318..863647 (+) | 330 | WP_002381635.1 | hypothetical protein | - |
| PSC78_RS04420 (PSC78_04420) | - | 863667..863873 (+) | 207 | WP_025190498.1 | hypothetical protein | - |
| PSC78_RS04425 (PSC78_04425) | - | 863896..864144 (+) | 249 | WP_126268635.1 | hypothetical protein | - |
| PSC78_RS04430 (PSC78_04430) | - | 864161..864481 (+) | 321 | WP_164548477.1 | PcfU | - |
| PSC78_RS04435 (PSC78_04435) | - | 864712..864891 (+) | 180 | WP_126268642.1 | hypothetical protein | - |
| PSC78_RS04440 (PSC78_04440) | - | 864875..865309 (+) | 435 | WP_126268637.1 | YopX family protein | - |
| PSC78_RS04445 (PSC78_04445) | - | 865306..865656 (+) | 351 | WP_126268638.1 | hypothetical protein | - |
| PSC78_RS04450 (PSC78_04450) | - | 865656..865997 (+) | 342 | WP_126268639.1 | hypothetical protein | - |
| PSC78_RS04455 (PSC78_04455) | - | 865994..866230 (+) | 237 | WP_078122596.1 | hypothetical protein | - |
| PSC78_RS04460 (PSC78_04460) | - | 866236..866559 (+) | 324 | WP_126268640.1 | DNA-directed RNA polymerase subunit delta | - |
| PSC78_RS04465 (PSC78_04465) | - | 866556..866807 (+) | 252 | WP_085443637.1 | hypothetical protein | - |
| PSC78_RS04470 (PSC78_04470) | - | 866819..867031 (+) | 213 | WP_085443636.1 | hypothetical protein | - |
| PSC78_RS04475 (PSC78_04475) | - | 867025..867210 (+) | 186 | WP_016618514.1 | hypothetical protein | - |
| PSC78_RS04480 (PSC78_04480) | - | 867222..867389 (+) | 168 | WP_164548478.1 | hypothetical protein | - |
| PSC78_RS04485 (PSC78_04485) | - | 867386..867874 (+) | 489 | WP_104859436.1 | DUF1642 domain-containing protein | - |
| PSC78_RS04490 (PSC78_04490) | - | 867875..868036 (+) | 162 | WP_162837175.1 | hypothetical protein | - |
| PSC78_RS04495 (PSC78_04495) | - | 868036..868227 (+) | 192 | WP_129343616.1 | hypothetical protein | - |
| PSC78_RS04500 (PSC78_04500) | - | 868228..868647 (+) | 420 | WP_002404562.1 | transcriptional regulator | - |
| PSC78_RS04505 (PSC78_04505) | - | 868896..869681 (+) | 786 | WP_232756777.1 | hypothetical protein | - |
| PSC78_RS14590 | - | 869748..870023 (+) | 276 | Protein_872 | helix-turn-helix domain-containing protein | - |
| PSC78_RS14595 | - | 870003..870212 (+) | 210 | Protein_873 | HNH endonuclease | - |
| PSC78_RS14560 | - | 870345..870533 (+) | 189 | Protein_874 | helix-turn-helix domain-containing protein | - |
| PSC78_RS04515 (PSC78_04515) | terL | 870526..871914 (+) | 1389 | WP_164978497.1 | phage terminase large subunit | - |
| PSC78_RS04520 (PSC78_04520) | - | 871927..873402 (+) | 1476 | WP_129343614.1 | phage portal protein | - |
| PSC78_RS04525 (PSC78_04525) | - | 873377..875281 (+) | 1905 | WP_126268689.1 | head protein | - |
| PSC78_RS04530 (PSC78_04530) | - | 875282..875512 (+) | 231 | WP_002380437.1 | hypothetical protein | - |
| PSC78_RS04535 (PSC78_04535) | - | 875569..875889 (+) | 321 | WP_105194825.1 | hypothetical protein | - |
| PSC78_RS04540 (PSC78_04540) | - | 875894..876136 (+) | 243 | WP_010708923.1 | hypothetical protein | - |
| PSC78_RS04545 (PSC78_04545) | - | 876141..876404 (+) | 264 | WP_105194824.1 | DUF6275 family protein | - |
| PSC78_RS04550 (PSC78_04550) | - | 876545..877171 (+) | 627 | WP_083578475.1 | capsid assembly scaffolding protein Gp46 family protein | - |
| PSC78_RS04555 (PSC78_04555) | - | 877185..878087 (+) | 903 | WP_129343613.1 | SU10 major capsid protein | - |
| PSC78_RS04560 (PSC78_04560) | - | 878111..878347 (+) | 237 | WP_002372022.1 | hypothetical protein | - |
| PSC78_RS04565 (PSC78_04565) | - | 878356..878700 (+) | 345 | WP_002395886.1 | hypothetical protein | - |
| PSC78_RS04570 (PSC78_04570) | - | 878697..879074 (+) | 378 | WP_126268687.1 | hypothetical protein | - |
| PSC78_RS04575 (PSC78_04575) | - | 879067..879465 (+) | 399 | WP_126268686.1 | HK97 gp10 family phage protein | - |
| PSC78_RS04580 (PSC78_04580) | - | 879491..879844 (+) | 354 | WP_333558529.1 | phage tail terminator family protein | - |
| PSC78_RS04585 (PSC78_04585) | - | 879845..880687 (+) | 843 | WP_126268685.1 | major tail protein | - |
| PSC78_RS04590 (PSC78_04590) | gpG | 880740..881093 (+) | 354 | WP_002364485.1 | phage tail assembly chaperone G | - |
| PSC78_RS04595 (PSC78_04595) | - | 881342..884239 (+) | 2898 | WP_164548486.1 | tape measure protein | - |
| PSC78_RS04600 (PSC78_04600) | - | 884229..884963 (+) | 735 | WP_002372015.1 | tail protein | - |
| PSC78_RS04605 (PSC78_04605) | - | 884945..887659 (+) | 2715 | WP_164548485.1 | phage tail spike protein | - |
| PSC78_RS04610 (PSC78_04610) | - | 887675..888556 (+) | 882 | WP_104670714.1 | phage baseplate upper protein | - |
| PSC78_RS04615 (PSC78_04615) | - | 888549..889145 (+) | 597 | WP_025192304.1 | hypothetical protein | - |
| PSC78_RS04620 (PSC78_04620) | - | 889142..889429 (+) | 288 | WP_002365086.1 | collagen-like protein | - |
| PSC78_RS04625 (PSC78_04625) | - | 889429..889938 (+) | 510 | WP_010716870.1 | hypothetical protein | - |
| PSC78_RS04630 (PSC78_04630) | - | 889955..890329 (+) | 375 | WP_002402192.1 | hypothetical protein | - |
| PSC78_RS04635 (PSC78_04635) | - | 890329..890466 (+) | 138 | WP_002399193.1 | XkdX family protein | - |
| PSC78_RS04640 (PSC78_04640) | - | 890500..890733 (+) | 234 | WP_002383824.1 | hemolysin XhlA family protein | - |
| PSC78_RS04645 (PSC78_04645) | - | 890736..890942 (+) | 207 | WP_010784051.1 | phage holin | - |
| PSC78_RS04650 (PSC78_04650) | - | 890945..892246 (+) | 1302 | WP_129343612.1 | LysM peptidoglycan-binding domain-containing protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19341.20 Da Isoelectric Point: 4.7078
>NTDB_id=786102 PSC78_RS04410 WP_172761135.1 862779..863306(+) (ssb) [Enterococcus faecalis strain CQJXZ21-077]
MINNVVLVGRLTKDLDLRYTASGSAVGSFTLAVNRNFTNQNGEREVDFINCVIWRKPAETIANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLESKSTNENRNSVQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
MINNVVLVGRLTKDLDLRYTASGSAVGSFTLAVNRNFTNQNGEREVDFINCVIWRKPAETIANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLESKSTNENRNSVQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=786102 PSC78_RS04410 WP_172761135.1 862779..863306(+) (ssb) [Enterococcus faecalis strain CQJXZ21-077]
ATGATAAATAATGTGGTATTAGTCGGAAGATTGACAAAAGATCTTGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGTGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATAGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTGTATGTGACTGAAGTTGTTTGCGAAAGCTTCCAATTATTAGAGTCAAAAAG
CACCAATGAGAATAGAAATAGCGTTCAGAGTTCGCAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCTTTTTAG
ATGATAAATAATGTGGTATTAGTCGGAAGATTGACAAAAGATCTTGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGTGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATAGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTGTATGTGACTGAAGTTGTTTGCGAAAGCTTCCAATTATTAGAGTCAAAAAG
CACCAATGAGAATAGAAATAGCGTTCAGAGTTCGCAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.551 |
100 |
0.606 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.865 |
100 |
0.589 |