Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GsuE55_RS02440 Genome accession   NZ_AP022557
Coordinates   499172..500893 (+) Length   573 a.a.
NCBI ID   WP_172418491.1    Uniprot ID   A0A679FHR4
Organism   Geobacillus subterraneus strain E55-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 494172..505893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GsuE55_RS02415 (GsuE55_04860) - 494357..494587 (+) 231 WP_033019355.1 exodeoxyribonuclease VII small subunit -
  GsuE55_RS02420 (GsuE55_04870) - 494591..495484 (+) 894 WP_033019356.1 polyprenyl synthetase family protein -
  GsuE55_RS02425 (GsuE55_04880) dxs 495688..497580 (+) 1893 WP_033019358.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GsuE55_RS02430 (GsuE55_04890) - 497586..498434 (+) 849 WP_172418490.1 TlyA family RNA methyltransferase -
  GsuE55_RS02435 (GsuE55_04900) argR 498485..498934 (+) 450 WP_033019362.1 transcriptional regulator ArgR -
  GsuE55_RS02440 (GsuE55_04910) recN 499172..500893 (+) 1722 WP_172418491.1 DNA repair protein RecN Machinery gene
  GsuE55_RS02445 (GsuE55_04920) spoIVB 501135..502430 (+) 1296 WP_244319355.1 SpoIVB peptidase -
  GsuE55_RS02450 (GsuE55_04930) spo0A 502702..503520 (+) 819 WP_172418799.1 sporulation transcription factor Spo0A -
  GsuE55_RS02455 (GsuE55_04940) - 503763..505331 (-) 1569 WP_033844061.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 63861.16 Da        Isoelectric Point: 4.9584

>NTDB_id=78602 GsuE55_RS02440 WP_172418491.1 499172..500893(+) (recN) [Geobacillus subterraneus strain E55-1]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCCQT
CADAGIDVSDGMVVLRRDILANGKSVCRINGKLVTTATLREIGATLVDIHGQHEHQELMDPARHLPLLDEFGGAETAAAL
AAYRAVYERYETLVKKIKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIANFQKIYTAIQRSYEALAG
EGRGLDSIGEAMRQLADVAAMDAALKEAHDATANSYYLLEEVLYKLRDQLEELEYDPLRLDAIESRLADIQQLKRKYGAT
IADILQYAETIAEEIEAIENRETHVHELERQLAVITDELLAEAKRLTNVRQAHARQLCERIHQELKDLYMDKTKFDIVFA
KREGPLDAPLVDGVPVKFHEDGVDVVEFYLSTNVGEPLKPLAKVASGGELSRIMLALKTIFSKHQGVTSIIFDEVDTGVS
GRVAQAMAEKIYRIANQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLDEEEKVKEIGRMISGVEMTELTKRH
AKELLELAAKMKQ

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=78602 GsuE55_RS02440 WP_172418491.1 499172..500893(+) (recN) [Geobacillus subterraneus strain E55-1]
ATGCTCGCGGAACTGTCGATTAAAAATTTTGCCATTATCGAGTCGCTCTCGCTGTCGTTCGACAAAGGACTGACCGTGTT
GACCGGGGAAACCGGAGCGGGCAAATCGATCATCATCGATGCGATTCATCTGCTGATCGGCGGCCGCGGTTCCGCCGAAT
TCGTCCGCTTCGGCGCGGAAAAGGCAGAGATCGAAGGGCTGTTTTTGCTTGACGATGACCGCCATCCGTGCTGCCAAACA
TGCGCCGATGCCGGCATTGATGTGAGCGACGGAATGGTGGTGCTGCGTCGCGACATCTTAGCCAATGGAAAAAGCGTCTG
CCGCATCAACGGCAAACTGGTGACGACGGCGACCTTGCGCGAAATCGGGGCGACGTTGGTGGACATCCACGGTCAGCACG
AACATCAAGAGCTGATGGACCCGGCGCGCCATCTGCCGCTGCTCGACGAATTTGGCGGCGCTGAAACGGCGGCGGCGCTC
GCCGCTTACCGCGCTGTATATGAGCGGTACGAAACATTGGTGAAAAAAATCAAAAAACTGAGTGAAAACGAACAGCAGAT
GGCGCATCGTCTCGATTTGCTGACGTTTCAGCTGCGCGAAATCGAGCAGGCGGCGCTCGAACCGGGCGAAGACGAACGGC
TGATGGAAGAGAAAGTGCGCATCGCCAACTTCCAAAAAATTTACACGGCGATCCAGCGAAGCTATGAAGCGCTAGCCGGC
GAGGGGCGCGGTCTCGATTCGATCGGGGAAGCGATGCGCCAGCTCGCCGATGTCGCCGCCATGGACGCCGCCCTCAAAGA
GGCGCACGATGCGACCGCGAACAGCTACTATTTGCTCGAAGAGGTCCTGTACAAGCTGCGCGATCAGCTCGAGGAGCTCG
AGTATGACCCGCTGCGGCTCGATGCCATTGAAAGCCGCCTCGCCGACATTCAACAACTGAAGCGGAAATACGGGGCGACG
ATCGCCGACATTTTGCAATATGCCGAGACGATCGCCGAAGAAATCGAAGCGATCGAAAACCGCGAAACGCATGTGCACGA
GCTCGAGCGGCAGCTGGCTGTGATAACCGATGAATTGCTCGCCGAGGCGAAGCGGCTGACCAACGTGCGGCAGGCGCACG
CCCGGCAGTTATGCGAGCGCATTCACCAAGAGCTGAAAGACTTGTATATGGACAAAACGAAGTTTGACATCGTTTTTGCG
AAGCGGGAAGGCCCGCTTGACGCCCCGCTGGTCGACGGCGTGCCGGTCAAGTTTCACGAAGACGGCGTCGACGTTGTCGA
GTTTTACCTTTCCACGAACGTCGGCGAACCGCTGAAACCGCTCGCGAAAGTGGCTTCCGGCGGCGAGCTGTCGCGCATCA
TGCTCGCCCTAAAAACGATTTTTTCCAAGCATCAAGGCGTCACATCGATCATTTTCGATGAAGTCGATACCGGGGTGAGC
GGCCGCGTCGCCCAAGCGATGGCAGAAAAAATTTACCGCATCGCCAACCAGTCGCAAGTGCTGTGCATTTCGCACTTGCC
TCAAGTCGCGGCGATGGCCGACACCCATTTGCTGATCGCCAAGGAAACGGACGGGGAGCGGACGAAAACGGTCGTGAGAA
AGCTGGATGAAGAAGAAAAAGTGAAAGAGATCGGCCGCATGATTTCCGGCGTGGAGATGACGGAATTGACGAAACGGCAC
GCCAAAGAGCTGCTCGAATTGGCGGCGAAAATGAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A679FHR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.801

100

0.609

Multiple sequence alignment