Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QY054_RS06370 Genome accession   NZ_CP130602
Coordinates   1242459..1242836 (-) Length   125 a.a.
NCBI ID   WP_011377923.1    Uniprot ID   Q79PF9
Organism   Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1237459..1247836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY054_RS06340 (QY054_06340) - 1237550..1238557 (+) 1008 WP_011377920.1 acyl-CoA dehydrogenase family protein -
  QY054_RS06345 (QY054_06345) kaiC 1238554..1240113 (-) 1560 WP_011242648.1 circadian clock protein KaiC -
  QY054_RS06350 (QY054_06350) kaiB 1240163..1240471 (-) 309 WP_011242647.1 circadian clock protein KaiB -
  QY054_RS06355 (QY054_06355) - 1240561..1241415 (-) 855 WP_011377921.1 circadian clock protein KaiA -
  QY054_RS06360 (QY054_06360) rplU 1241653..1242036 (+) 384 WP_011377922.1 50S ribosomal protein L21 -
  QY054_RS06365 (QY054_06365) rpmA 1242071..1242337 (+) 267 WP_011242644.1 50S ribosomal protein L27 -
  QY054_RS06370 (QY054_06370) pilH 1242459..1242836 (-) 378 WP_011377923.1 PleD family two-component system response regulator Machinery gene
  QY054_RS06375 (QY054_06375) truB 1242929..1243813 (+) 885 WP_011242642.1 tRNA pseudouridine(55) synthase TruB -
  QY054_RS06380 (QY054_06380) devC 1243834..1245012 (-) 1179 WP_011377924.1 ABC transporter permease DevC -
  QY054_RS06385 (QY054_06385) - 1244996..1246096 (-) 1101 WP_011242640.1 HlyD family efflux transporter periplasmic adaptor subunit -
  QY054_RS06390 (QY054_06390) - 1246185..1246931 (-) 747 WP_011377925.1 phycocyanobilin:ferredoxin oxidoreductase -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 13841.82 Da        Isoelectric Point: 4.5355

>NTDB_id=785972 QY054_RS06370 WP_011377923.1 1242459..1242836(-) (pilH) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]
MANILVVDDSSLYLELARQALVDHGHQVELANNGQEALQSVANKKPDLILLDIVMPEMNGYDVLRSLKKSAENATIPVIL
CSTKGEDFDKYWGLKQGANAYLTKPYEPTELLLLVQEQLTAARNS

Nucleotide


Download         Length: 378 bp        

>NTDB_id=785972 QY054_RS06370 WP_011377923.1 1242459..1242836(-) (pilH) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]
ATGGCCAATATCCTCGTTGTTGATGACAGCAGTCTCTACCTAGAACTTGCCCGTCAAGCCTTAGTTGATCATGGCCACCA
GGTTGAACTTGCCAACAACGGTCAAGAAGCCTTGCAATCCGTCGCCAACAAGAAGCCTGACTTGATTCTGCTCGATATCG
TTATGCCAGAAATGAATGGCTACGACGTACTGCGATCGCTCAAGAAATCAGCTGAAAACGCTACGATTCCTGTCATTCTT
TGCTCGACCAAAGGCGAGGATTTTGACAAGTATTGGGGGCTCAAACAGGGAGCCAATGCCTACTTGACTAAGCCCTATGA
ACCAACCGAACTATTGCTATTGGTGCAGGAACAACTGACTGCAGCCCGCAATTCTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q79PF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

48.739

95.2

0.464
  vicR Streptococcus mutans UA159

37.097

99.2

0.368