Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   QY054_RS04435 Genome accession   NZ_CP130602
Coordinates   842340..845351 (-) Length   1003 a.a.
NCBI ID   WP_011243004.1    Uniprot ID   Q31PZ0
Organism   Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 837340..850351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY054_RS04415 (QY054_04415) - 838508..838939 (-) 432 WP_011243009.1 hypothetical protein -
  QY054_RS04420 (QY054_04420) - 839103..839813 (-) 711 WP_011377760.1 PHP domain-containing protein -
  QY054_RS04425 (QY054_04425) - 840267..841082 (-) 816 WP_231621331.1 D-hexose-6-phosphate mutarotase -
  QY054_RS04430 (QY054_04430) pilT 841124..842236 (-) 1113 WP_011243005.1 type IV pilus twitching motility protein PilT Machinery gene
  QY054_RS04435 (QY054_04435) uvrA 842340..845351 (-) 3012 WP_011243004.1 excinuclease ABC subunit UvrA Machinery gene
  QY054_RS04440 (QY054_04440) - 845478..845639 (+) 162 WP_155813866.1 hypothetical protein -
  QY054_RS04445 (QY054_04445) hemJ 845826..846413 (-) 588 WP_011243003.1 protoporphyrinogen oxidase HemJ -
  QY054_RS04450 (QY054_04450) - 846483..846683 (-) 201 WP_011243002.1 DUF2811 domain-containing protein -
  QY054_RS04455 (QY054_04455) purM 847237..848262 (+) 1026 WP_011377763.1 phosphoribosylformylglycinamidine cyclo-ligase -
  QY054_RS04460 (QY054_04460) - 848426..848887 (+) 462 WP_162010020.1 transposase -
  QY054_RS04465 (QY054_04465) - 848874..850109 (+) 1236 WP_011242999.1 LL-diaminopimelate aminotransferase -

Sequence

Protein


Download         Length: 1003 a.a.        Molecular weight: 110350.30 Da        Isoelectric Point: 6.6462

>NTDB_id=785964 QY054_RS04435 WP_011243004.1 842340..845351(-) (uvrA) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]
MPKRASVEPSSDLAHRNGDRPAAETDQIRVRGARQHNLQNLDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVES
LSAYARQFLGQVDKPDVDAIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGRAGAPHCPHCDRSIAPQTIDQMV
DRLAELPDRSRFQILAPVVRGKKGTHKKLLSSLAAEGFVRVRINGEVRELSDSIELDKNHAHTIEIVVDRLVQKAGIQER
LVDSLTTCLRRSEGIAVIDVLPGDRGNVITLPVEHHSSRAADTGAEYNREPQGYELVFSENFACPEHGAVMEELSPRLFS
FNSPYGACSHCHGLGTLRTFSPELVVPDPNLPVYAAIAPWSEKDHSYYFNLLCGVAEVSGFEISDRWQDLTPDQQHAILF
GSSEPIAVETDSRFRDRHLYHRPFEGVIPILERQYRETSSEVYKQKLEKYLVDQTCEVCHGLRLKPESLAVRMGPYRITD
LTSVSVRECLNKIEALIGSDNREPLLTARQMQIGDLVLREIQARLRFLLDVGLDYLTLDRPAMTLSGGEAQRIRLATQIG
AGLTGVLYVLDEPSIGLHQRDNDRLLNTLIRLRDLGNTLIVVEHDEDTIRAADHLVDIGPGAGVHGGRIVAQGNLNQLLT
AEESLTGAYLSGRRRIATPDSRRAGNGRRLLLQGANRNNLQNLDVEIPLGKLVCITGVSGSGKSTLINELLHPALEHSLG
LKVPFPKGLAVLKGTKAIDKVIVIDQSPIGRTPRSNPATYTGAFDPIRQVFAATTEAKARGYQPGQFSFNVKGGRCEACG
GQGVNVIEMNFLPDVYVQCDVCKGARYNRETLQVKYKGKTIADVLNMTVEEAAQFFENIPQASSRLQTLVDVGLGYVRLG
QPAPTLSGGEAQRVKLATELARRATGKTLYLIDEPTTGLSFYDVHKLLDVMQRLVDKGNSIVVIEHNLDVIRCADWIIDL
GPEGGDRGGEIVVCGEPEIVATHNQSHTGRYLAQVLAQHPPGQ

Nucleotide


Download         Length: 3012 bp        

>NTDB_id=785964 QY054_RS04435 WP_011243004.1 842340..845351(-) (uvrA) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]
ATGCCCAAGCGCGCTTCTGTTGAGCCTTCATCTGATCTGGCTCATCGTAATGGCGATCGTCCAGCAGCGGAGACGGATCA
AATTCGGGTACGGGGAGCCCGCCAGCATAATCTCCAAAACCTCGATCTCGACTTACCCCGTAACCAGCTGATCGTATTCA
CGGGGGTGAGTGGCTCTGGCAAGTCGTCCTTGGCCTTCGACACGATTTTTGCCGAGGGACAACGCCGCTACGTTGAGTCC
CTATCGGCATACGCCCGTCAGTTCCTCGGTCAAGTCGATAAGCCCGATGTTGACGCGATCGAGGGTTTGAGTCCTGCTAT
TTCAATCGACCAAAAGTCGACTTCTCACAATCCCCGCTCGACGGTGGGCACCGTCACCGAAATCTACGATTATCTGCGCT
TGCTCTTTGGGCGAGCGGGTGCTCCCCACTGCCCTCACTGCGATCGCTCGATCGCCCCGCAAACCATTGATCAAATGGTC
GATCGCCTGGCAGAACTGCCTGATCGCAGCCGCTTTCAAATTCTGGCGCCGGTGGTACGCGGCAAAAAAGGAACCCATAA
AAAGTTGCTTTCCAGTCTGGCAGCAGAAGGCTTTGTACGGGTGCGGATCAACGGCGAAGTGCGAGAACTGAGCGACAGCA
TTGAGCTGGATAAAAATCATGCTCACACAATTGAAATTGTGGTCGATCGCCTCGTTCAAAAGGCCGGCATCCAAGAGCGA
CTGGTGGATTCCCTGACGACCTGTTTGCGCCGATCTGAAGGAATTGCGGTGATCGATGTCCTGCCGGGCGATCGCGGTAA
CGTCATCACCCTGCCGGTTGAGCACCATTCCAGCCGAGCCGCTGATACGGGCGCTGAATACAATCGAGAGCCCCAGGGCT
ATGAACTGGTGTTCTCCGAAAACTTTGCCTGCCCAGAGCATGGCGCGGTCATGGAGGAGCTATCGCCACGCCTCTTTTCC
TTTAACTCGCCCTACGGGGCCTGCTCCCATTGCCATGGCTTGGGCACCCTGCGCACCTTTTCACCAGAGTTGGTGGTTCC
TGATCCCAACCTGCCGGTCTACGCGGCGATCGCGCCTTGGTCCGAGAAAGATCACAGCTACTACTTCAATCTCCTCTGTG
GTGTGGCTGAAGTCAGTGGCTTTGAAATCAGCGATCGCTGGCAGGATCTGACGCCTGATCAGCAGCATGCGATTCTCTTC
GGCAGTAGTGAGCCGATCGCCGTCGAAACCGACTCGCGCTTCCGCGATCGCCATCTCTACCACCGCCCCTTCGAAGGTGT
CATCCCCATCTTGGAGCGGCAGTATCGAGAGACCAGCTCGGAAGTCTACAAACAAAAGCTCGAGAAATATTTAGTCGACC
AAACCTGCGAAGTCTGCCACGGCCTGCGCCTCAAGCCCGAATCGTTGGCGGTACGCATGGGACCCTACCGCATCACCGAC
CTAACCAGTGTCTCGGTGCGGGAATGTCTGAACAAAATTGAGGCCCTGATCGGCAGCGACAATCGCGAACCGCTGTTGAC
TGCCCGCCAAATGCAGATTGGCGATCTGGTACTGCGGGAAATTCAAGCGCGCCTGCGCTTCCTGCTCGATGTTGGCTTGG
ACTATCTCACCCTCGATCGCCCAGCGATGACCCTCTCCGGCGGTGAAGCCCAGCGGATTCGCTTGGCGACCCAAATTGGC
GCGGGGCTGACTGGCGTGCTCTACGTTTTGGATGAACCGAGTATTGGTCTCCACCAACGCGATAACGATCGCCTGCTCAA
CACCTTGATTCGCCTGCGCGATCTCGGTAACACCCTAATCGTGGTCGAGCACGATGAAGATACGATTCGCGCTGCTGATC
ACCTCGTGGATATTGGCCCCGGTGCTGGTGTTCACGGCGGCCGCATTGTGGCTCAAGGGAACTTGAACCAGTTATTGACG
GCTGAAGAGTCTCTCACAGGGGCCTATCTCTCGGGTCGGCGGCGCATTGCTACGCCTGACAGCCGTCGCGCTGGGAATGG
CCGTCGTCTGCTTCTCCAAGGTGCGAACCGCAACAACCTCCAAAATCTGGATGTAGAAATCCCCCTCGGCAAGCTCGTCT
GTATCACCGGTGTCAGCGGGTCGGGTAAGTCGACGCTGATCAACGAACTCTTGCATCCGGCCTTGGAACATAGTTTGGGG
CTCAAGGTCCCGTTTCCCAAAGGCCTGGCAGTGCTGAAAGGGACGAAAGCAATCGACAAAGTGATTGTGATCGATCAGTC
ACCCATTGGTCGTACACCGCGATCGAATCCTGCCACCTATACGGGGGCATTTGACCCCATCCGGCAGGTATTTGCAGCGA
CCACGGAAGCCAAAGCCCGTGGCTATCAACCTGGGCAATTCTCGTTCAACGTCAAAGGCGGCCGCTGCGAAGCCTGTGGC
GGGCAGGGCGTCAACGTGATTGAGATGAACTTCCTGCCCGATGTCTACGTCCAGTGTGATGTCTGCAAAGGCGCTCGCTA
TAACCGCGAGACGTTACAGGTCAAGTACAAGGGCAAAACGATCGCGGACGTCCTGAACATGACCGTTGAAGAAGCGGCAC
AGTTCTTCGAGAACATTCCCCAAGCCAGTAGCCGTCTCCAAACCTTGGTTGATGTCGGCCTCGGCTATGTTCGCCTAGGG
CAACCGGCACCCACCCTCTCAGGCGGTGAGGCTCAGCGTGTCAAGCTAGCGACGGAACTAGCCCGACGAGCAACCGGTAA
GACGCTCTATCTCATTGATGAGCCGACGACTGGTCTCTCTTTCTACGATGTCCACAAGCTGCTAGACGTAATGCAGCGTT
TAGTCGATAAAGGCAATTCGATTGTGGTGATTGAACACAACTTAGATGTGATCCGTTGTGCTGACTGGATTATCGACCTC
GGGCCTGAAGGCGGCGATCGCGGCGGCGAAATCGTTGTTTGCGGCGAGCCAGAGATCGTAGCAACCCACAATCAATCTCA
CACAGGCCGCTATCTGGCCCAAGTCCTTGCCCAGCATCCGCCCGGTCAGTAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(342-449)

UvrA interaction domain (UvrA_inter)

(154-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31PZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

53.498

96.909

0.518
  uvrA Streptococcus pneumoniae TIGR4

53.498

96.909

0.518
  uvrA Streptococcus pneumoniae D39

53.498

96.909

0.518