Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QY054_RS01550 Genome accession   NZ_CP130602
Coordinates   300008..301447 (-) Length   479 a.a.
NCBI ID   WP_011377526.1    Uniprot ID   Q31RI5
Organism   Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 295008..306447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY054_RS01530 (QY054_01530) mreD 296980..297663 (-) 684 WP_011243526.1 rod shape-determining protein MreD -
  QY054_RS01535 (QY054_01535) mreC 297624..298373 (-) 750 WP_011243525.1 rod shape-determining protein MreC -
  QY054_RS01540 (QY054_01540) - 298398..299399 (-) 1002 WP_039755477.1 rod shape-determining protein -
  QY054_RS01545 (QY054_01545) ssb 299628..299990 (+) 363 WP_011377525.1 single-stranded DNA-binding protein Machinery gene
  QY054_RS01550 (QY054_01550) comA 300008..301447 (-) 1440 WP_011377526.1 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein Machinery gene
  QY054_RS01555 (QY054_01555) - 301543..302697 (+) 1155 WP_011377527.1 TrkA family potassium uptake protein -
  QY054_RS01560 (QY054_01560) - 302833..303480 (+) 648 WP_011243520.1 Coq4 family protein -
  QY054_RS01565 (QY054_01565) - 303815..304045 (+) 231 WP_011377528.1 addiction module protein -
  QY054_RS01570 (QY054_01570) - 304042..304332 (+) 291 WP_039755475.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QY054_RS01575 (QY054_01575) - 304710..305936 (-) 1227 WP_011377529.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53029.45 Da        Isoelectric Point: 6.1246

>NTDB_id=785952 QY054_RS01550 WP_011377526.1 300008..301447(-) (comA) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]
MKSGVLALLLGLLTACQAPLAQIQSSGQGAADRWDANAPVQVAFNHNPDQRFTDSLGRDREGDDLEGQLLASLEQAQTSI
DVAVQEIQVPRLATALIQKHQAGIPVRVIVENQYRQPWSQRLSGNLSDRERQRLENYRQIADRNGDGQLSPAEIAGGDAV
LMLERAGVPILDDTDDGSQGSGLMHHKFAIIDRRWVVTGSANWTASDFFGDPGRPASRGNANHLLWFRSPALAAIFQEEF
NLMWGDGPSKLPDSRFGLGKPLRSPKSVRIGNTRLLVQFSPTSPRLPWQESTNGTIARYLTQAQKQIDLALFVFSEQAIA
DVLEARSQQGTQVRLLIDPGFAYRPYSELLDMVGLALPDRDCRVESNNRPWSSPLTTAGAPRLTPGDTLHHKFAVIDRQR
VLTGSHNWSAAANLRNDETFLVIEDSSLADRFRAEFERLYADAFLGIPPALQRRVNEAKRRCGSRITPNSNQDLTETED

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=785952 QY054_RS01550 WP_011377526.1 300008..301447(-) (comA) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]
ATGAAGTCTGGAGTACTCGCCCTTTTGCTGGGGCTACTGACTGCCTGCCAAGCTCCACTGGCACAAATTCAGTCTTCGGG
GCAGGGCGCAGCCGATCGCTGGGATGCCAACGCTCCCGTGCAAGTCGCGTTCAATCACAACCCAGATCAGCGATTTACCG
ATAGCTTGGGCCGCGATCGCGAAGGTGATGATTTGGAAGGACAACTCCTCGCCAGCCTAGAGCAGGCTCAAACATCGATC
GATGTCGCGGTTCAGGAAATTCAGGTGCCCCGCTTAGCGACTGCTTTGATCCAAAAACACCAAGCGGGCATTCCCGTTCG
CGTCATTGTGGAAAACCAGTATCGCCAACCTTGGAGTCAACGACTGTCAGGCAACCTGAGTGATCGCGAGCGGCAGCGAC
TAGAGAACTACCGACAGATAGCCGATCGCAATGGTGATGGCCAACTCAGTCCCGCCGAAATTGCTGGCGGGGATGCTGTG
TTAATGCTGGAGCGCGCTGGTGTACCGATTCTGGACGACACCGACGACGGCAGCCAAGGCAGCGGGTTGATGCACCATAA
GTTCGCGATCATCGATCGCCGCTGGGTTGTCACCGGCTCTGCCAACTGGACAGCCAGCGATTTCTTTGGCGATCCGGGCC
GACCTGCCAGTCGTGGCAATGCCAATCATCTGCTCTGGTTCCGCAGCCCAGCGCTCGCAGCGATTTTCCAAGAAGAATTC
AACCTGATGTGGGGCGATGGCCCCAGTAAATTGCCGGATAGCCGCTTTGGCCTTGGTAAGCCCTTGCGATCGCCTAAATC
GGTCCGTATTGGCAACACGCGCCTGCTGGTTCAGTTTTCGCCCACTAGTCCCCGGCTACCGTGGCAGGAAAGCACCAACG
GCACAATCGCCCGTTACCTCACCCAAGCCCAGAAGCAGATCGATCTAGCACTGTTTGTCTTTTCGGAACAAGCGATCGCC
GATGTTTTAGAAGCGCGATCGCAGCAAGGTACTCAAGTGCGACTGTTAATTGACCCTGGCTTTGCCTATCGTCCCTACAG
CGAACTGCTAGATATGGTCGGCCTAGCGCTTCCCGATCGCGACTGCCGGGTTGAGTCAAACAATCGCCCTTGGAGTAGTC
CCCTCACAACAGCAGGAGCGCCACGACTGACGCCCGGCGACACGCTCCACCACAAATTTGCCGTGATTGATCGCCAGCGC
GTCCTGACCGGATCTCACAACTGGAGTGCCGCAGCCAACCTCAGAAATGACGAAACATTTTTAGTGATCGAGGACTCTAG
TTTGGCCGATCGCTTTCGGGCAGAATTTGAGCGACTCTACGCTGATGCCTTCTTAGGTATTCCGCCAGCCCTGCAGCGCC
GCGTCAATGAAGCGAAGCGACGCTGCGGTAGCCGAATCACTCCGAACAGCAATCAGGACTTAACCGAAACTGAGGATTGA

Domains

Predicted by InterProScan.

PLD-like domain (PLDc_2)

(70-244)

PLD-like domain (PLDc_2)

(298-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31RI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

45.622

90.605

0.413