Detailed information NTG0785951

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PPH92_RS21095
• Genome accession: NZ_CP117481
• Coordinates: 4295973..4296773 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain DS-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4290973..4301773

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PPH92_RS21060 (PPH92_21060)	gspH	4291129..4291644 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
PPH92_RS21065 (PPH92_21065)	gspI	4291641..4292006 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
PPH92_RS21070 (PPH92_21070)	gspJ	4292003..4292599 (+)	597	WP_038807639.1	type II secretion system minor pseudopilin GspJ	-
PPH92_RS21075 (PPH92_21075)	gspK	4292596..4293582 (+)	987	WP_077258272.1	type II secretion system minor pseudopilin GspK	-
PPH92_RS21080 (PPH92_21080)	gspL	4293569..4294762 (+)	1194	WP_064159040.1	type II secretion system protein GspL	-
PPH92_RS21085 (PPH92_21085)	-	4294755..4295240 (+)	486	WP_023284693.1	type II secretion system protein M	-
PPH92_RS21090 (PPH92_21090)	-	4295230..4295976 (+)	747	WP_004145897.1	type II secretion system protein N	-
PPH92_RS21095 (PPH92_21095)	pilD	4295973..4296773 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
PPH92_RS21100 (PPH92_21100)	hrpB	4296821..4299250 (-)	2430	WP_273856109.1	ATP-dependent helicase HrpB	-
PPH92_RS21105 (PPH92_21105)	thpR	4299323..4299859 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
PPH92_RS21110 (PPH92_21110)	sfsA	4299859..4300575 (+)	717	WP_048265185.1	DNA/RNA nuclease SfsA	-
PPH92_RS21115 (PPH92_21115)	dksA	4300738..4301193 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=785951 PPH92_RS21095 WP_004145898.1 4295973..4296773(+) (pilD) [Klebsiella pneumoniae strain DS-1]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=785951 PPH92_RS21095 WP_004145898.1 4295973..4296773(+) (pilD) [Klebsiella pneumoniae strain DS-1]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425