Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH91_RS18945 Genome accession   NZ_CP117465
Coordinates   4232717..4233352 (-) Length   211 a.a.
NCBI ID   WP_160893079.1    Uniprot ID   -
Organism   Pseudomonas sp. FP1154     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4227717..4238352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH91_RS18910 (PSH91_18905) - 4228105..4228575 (-) 471 WP_047228187.1 (2Fe-2S)-binding protein -
  PSH91_RS18915 (PSH91_18910) murB 4228832..4229851 (-) 1020 WP_305466480.1 UDP-N-acetylmuramate dehydrogenase -
  PSH91_RS18920 (PSH91_18915) - 4229848..4230312 (-) 465 WP_092400061.1 low molecular weight protein-tyrosine-phosphatase -
  PSH91_RS18925 (PSH91_18920) kdsB 4230312..4231076 (-) 765 WP_076383826.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH91_RS18930 (PSH91_18925) - 4231073..4231258 (-) 186 WP_003179363.1 Trm112 family protein -
  PSH91_RS18935 (PSH91_18930) lpxK 4231282..4232292 (-) 1011 WP_305466482.1 tetraacyldisaccharide 4'-kinase -
  PSH91_RS18940 (PSH91_18935) - 4232292..4232720 (-) 429 WP_047228182.1 biopolymer transporter ExbD -
  PSH91_RS18945 (PSH91_18940) exbB 4232717..4233352 (-) 636 WP_160893079.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH91_RS18950 (PSH91_18945) comA 4233455..4235695 (-) 2241 WP_305466486.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH91_RS18955 (PSH91_18950) - 4235841..4236356 (+) 516 WP_047228179.1 DUF2062 domain-containing protein -
  PSH91_RS18960 (PSH91_18955) - 4236457..4237236 (-) 780 WP_047228178.1 ABC transporter permease -
  PSH91_RS18965 (PSH91_18960) - 4237233..4238165 (-) 933 WP_047228177.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22953.15 Da        Isoelectric Point: 8.0841

>NTDB_id=785843 PSH91_RS18945 WP_160893079.1 4232717..4233352(-) (exbB) [Pseudomonas sp. FP1154]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKKLNKERLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFTGAGMTANASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785843 PSH91_RS18945 WP_160893079.1 4232717..4233352(-) (exbB) [Pseudomonas sp. FP1154]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGTGGCGCTGGGAATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGAAACTGAACAAGGAGCGGCTCAAGGAGCTGCGGGCCAGTTCACCGCTGGGTGAAATCCTCGCCGCGGGGCTGGCAAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTCATCCATGAGCTGGAACGCTACAT
CAATGCCCTGGGCACAATTGCCGCCATGGCCCCGTTGCTGGGCCTGCTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GTTCGTTCACCGGCGCCGGCATGACCGCCAATGCCTCGGTGCTGGCAGGGGGGATTTCCAAGGCGTTGATCACCACGGCC
GCCGGGTTGATGGTGGGGATTCCTTCGGTGTTTTTCCATCGCTTCCTGCAACGGCGCATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAGGCCATCAAGCTGGTCGAGGTGGTGCAAGGCGACCGTGACGTGGACCTGGCCGAGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.286

99.526

0.839