Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH91_RS18950 Genome accession   NZ_CP117465
Coordinates   4233455..4235695 (-) Length   746 a.a.
NCBI ID   WP_305466486.1    Uniprot ID   -
Organism   Pseudomonas sp. FP1154     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4228455..4240695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH91_RS18915 (PSH91_18910) murB 4228832..4229851 (-) 1020 WP_305466480.1 UDP-N-acetylmuramate dehydrogenase -
  PSH91_RS18920 (PSH91_18915) - 4229848..4230312 (-) 465 WP_092400061.1 low molecular weight protein-tyrosine-phosphatase -
  PSH91_RS18925 (PSH91_18920) kdsB 4230312..4231076 (-) 765 WP_076383826.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH91_RS18930 (PSH91_18925) - 4231073..4231258 (-) 186 WP_003179363.1 Trm112 family protein -
  PSH91_RS18935 (PSH91_18930) lpxK 4231282..4232292 (-) 1011 WP_305466482.1 tetraacyldisaccharide 4'-kinase -
  PSH91_RS18940 (PSH91_18935) - 4232292..4232720 (-) 429 WP_047228182.1 biopolymer transporter ExbD -
  PSH91_RS18945 (PSH91_18940) exbB 4232717..4233352 (-) 636 WP_160893079.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH91_RS18950 (PSH91_18945) comA 4233455..4235695 (-) 2241 WP_305466486.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH91_RS18955 (PSH91_18950) - 4235841..4236356 (+) 516 WP_047228179.1 DUF2062 domain-containing protein -
  PSH91_RS18960 (PSH91_18955) - 4236457..4237236 (-) 780 WP_047228178.1 ABC transporter permease -
  PSH91_RS18965 (PSH91_18960) - 4237233..4238165 (-) 933 WP_047228177.1 ABC transporter ATP-binding protein -
  PSH91_RS18970 (PSH91_18965) - 4238299..4238922 (-) 624 WP_047228176.1 glutathione S-transferase family protein -
  PSH91_RS18975 (PSH91_18970) - 4238968..4239627 (-) 660 WP_076383822.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 80995.24 Da        Isoelectric Point: 9.9634

>NTDB_id=785844 PSH91_RS18950 WP_305466486.1 4233455..4235695(-) (comA) [Pseudomonas sp. FP1154]
MRTGMVALALGLLTPVFCPALPPLWLIAVMPVLALMVLPFRTHPLGFFLIGLAWACLSAQLALDDRLPAALDGETRWLEG
RVVGLPQYNEGVVRFELTDAHSRRTRLPSSMRLAWFGGPPVSSGERWRLAVKLKRPTGLLNPHGFDYQAWLLSRGIGATG
TVKDGHLRQPAQGAWRDGVRQALAQVDAQGRSGALAALVLGDGAGLSRDDWQVLQDTGTVHLLVISGQHIGLLAALVYLL
VAGAARYGMWPVRLPWLPWACALAFIAALGYGLLAGFEVPVRRACAMIGLVLLWRLRYRHPDPWWAWLLAFNGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVAVGLCPILLILGLPISLSGPLVNLVAVPWVSLLVLPPAL
LGTALLPMPLVGEGLLWIAGGLLDLLFKGLALVAGRIPAWVPAAIPLWVWCMAALGALLLLLPKGVPLRVLGWPMVLLVV
FPPREDVPPGQAEIWQLDVGQGLAVLVRTRHHALLYDAGPRFGEADAGERVVLPTLRKLGVAGLDLMLLSHADADHAGGA
QAVRNGLPTVRVVSGDPAALPATLQAEACDSGARWEWDGVRFELWQWSSALESNQRSCVLLVEAGGERLLLTGDIDSHAE
RALLDGPLAVPVQWLAAPHHGSRSSSSMLLLSRLKPHSVLISRGQGNAFGHPHPRVLARYRRLGMAIYDSAEQGAIRLQL
GAFEAPRLQAGQRRYWRDPPSAGPWP

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=785844 PSH91_RS18950 WP_305466486.1 4233455..4235695(-) (comA) [Pseudomonas sp. FP1154]
ATGCGCACAGGGATGGTCGCGCTTGCACTCGGGCTGCTGACCCCGGTTTTTTGCCCGGCGCTGCCGCCGCTGTGGCTGAT
TGCGGTCATGCCTGTGCTGGCGCTGATGGTTTTGCCGTTTCGAACTCATCCGCTGGGTTTTTTCCTGATCGGGCTGGCTT
GGGCGTGTCTGTCGGCGCAACTGGCCCTGGACGATCGGTTGCCTGCCGCGCTGGATGGAGAAACCCGCTGGCTCGAAGGG
CGCGTCGTCGGTTTACCGCAATATAACGAAGGTGTGGTGCGCTTTGAACTGACCGATGCCCATTCCCGCCGCACACGGCT
GCCGTCGTCGATGCGCCTGGCCTGGTTCGGTGGACCGCCTGTGAGCAGCGGCGAACGTTGGCGATTGGCGGTAAAGCTCA
AACGCCCCACCGGGCTACTGAACCCCCATGGCTTCGATTACCAGGCCTGGCTGTTGAGCCGCGGCATCGGCGCGACTGGC
ACGGTCAAGGACGGTCATCTCCGGCAACCTGCCCAAGGTGCCTGGCGCGACGGCGTGCGTCAGGCGCTGGCGCAAGTCGA
CGCCCAGGGCCGCTCCGGGGCGCTGGCGGCATTGGTCCTGGGGGACGGAGCTGGGCTGAGTCGTGATGACTGGCAGGTAC
TGCAAGACACCGGTACGGTCCATCTGCTGGTGATCTCCGGGCAGCACATCGGCCTGCTTGCCGCACTGGTGTACCTGCTG
GTGGCAGGTGCGGCGCGCTATGGCATGTGGCCGGTGCGTCTGCCGTGGCTACCTTGGGCCTGCGCTCTGGCCTTTATCGC
AGCCTTGGGTTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGGCGCGCTTGCGCGATGATCGGCCTGGTGCTGCTGT
GGCGTTTGCGTTACCGGCATCCGGACCCCTGGTGGGCGTGGCTGCTGGCTTTCAATGGGGTGCTGGTGTTCGATCCATTG
GCCAGCCTGCGGCCAGGGTTCTGGCTGTCGTTCGCCGCGGTGGCGATCCTGATGTTTACTTTCGGCGCACGCTTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAATGGTTGGTGGCAGTCGGACTGTGCCCGATCCTGTTGATATTGGGTT
TGCCGATCAGCCTCAGCGGGCCTCTGGTGAACCTGGTGGCGGTGCCTTGGGTCAGCCTGCTGGTGTTGCCGCCGGCGCTG
CTCGGTACGGCGTTGTTGCCGATGCCGCTCGTGGGTGAAGGGCTGCTTTGGATCGCCGGCGGGTTGCTCGATCTGCTCTT
CAAGGGGCTGGCGCTGGTGGCCGGGCGAATACCGGCATGGGTGCCTGCGGCTATCCCCCTGTGGGTGTGGTGCATGGCCG
CTCTGGGGGCTTTGTTACTGTTGCTGCCCAAAGGCGTGCCACTGCGGGTACTGGGATGGCCCATGGTACTGCTGGTGGTT
TTCCCTCCGAGGGAGGATGTGCCTCCGGGGCAGGCCGAAATCTGGCAACTGGACGTGGGTCAAGGGTTGGCGGTGCTGGT
ACGCACCCGTCATCATGCCTTGCTTTACGACGCGGGGCCGCGCTTTGGCGAGGCCGACGCGGGTGAGCGCGTGGTGCTGC
CGACCCTGCGCAAGCTGGGTGTCGCCGGGTTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGCGGCGCC
CAAGCCGTGCGCAATGGCTTGCCAACGGTCCGGGTGGTCAGTGGCGACCCCGCCGCGTTGCCTGCCACCCTGCAGGCAGA
GGCGTGCGACAGTGGCGCGCGCTGGGAGTGGGACGGGGTCAGGTTCGAGCTGTGGCAATGGTCATCTGCCCTTGAAAGCA
ATCAGAGGTCCTGCGTTCTGCTGGTCGAGGCCGGCGGTGAGCGGTTGTTGCTCACCGGAGACATCGATAGCCATGCCGAG
CGCGCGTTGCTCGACGGGCCCCTGGCCGTGCCGGTCCAGTGGCTGGCGGCGCCCCATCACGGTAGCCGCAGTTCATCGTC
GATGTTGCTGTTGTCACGGCTCAAACCCCATTCGGTGTTGATCTCCCGAGGGCAGGGCAATGCATTCGGCCATCCTCATC
CGCGAGTGCTGGCTCGTTATCGCCGCTTGGGCATGGCGATCTACGACAGTGCCGAACAGGGTGCCATTCGTCTGCAACTG
GGGGCTTTCGAAGCACCGCGCCTTCAGGCCGGCCAACGGCGCTACTGGCGCGACCCGCCGTCTGCGGGACCATGGCCGTA
A

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-165)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-667)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.173

95.979

0.587