Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   PSH68_RS26135 Genome accession   NZ_CP117464
Coordinates   5716278..5716685 (-) Length   135 a.a.
NCBI ID   WP_034109939.1    Uniprot ID   -
Organism   Pseudomonas lurida strain FP1465     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5711278..5721685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH68_RS26120 (PSH68_26110) - 5713281..5715332 (-) 2052 WP_034109935.1 methyl-accepting chemotaxis protein -
  PSH68_RS26125 (PSH68_26115) - 5715329..5715853 (-) 525 WP_034109936.1 chemotaxis protein CheW -
  PSH68_RS26130 (PSH68_26120) pilH 5715866..5716231 (-) 366 WP_014720320.1 twitching motility response regulator PilH -
  PSH68_RS26135 (PSH68_26125) pilG 5716278..5716685 (-) 408 WP_034109939.1 twitching motility response regulator PilG Regulator
  PSH68_RS26140 (PSH68_26130) gshB 5716925..5717896 (+) 972 WP_305434390.1 glutathione synthase -
  PSH68_RS26145 (PSH68_26135) - 5718004..5718909 (+) 906 WP_305434391.1 energy transducer TonB -
  PSH68_RS26150 (PSH68_26140) - 5719022..5719591 (+) 570 WP_034110680.1 YqgE/AlgH family protein -
  PSH68_RS26155 (PSH68_26145) ruvX 5719591..5720028 (+) 438 WP_005792259.1 Holliday junction resolvase RuvX -
  PSH68_RS26160 (PSH68_26150) pyrR 5720101..5720607 (+) 507 WP_069078480.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PSH68_RS26165 (PSH68_26155) - 5720632..5721636 (+) 1005 WP_025857712.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14920.43 Da        Isoelectric Point: 7.3842

>NTDB_id=785814 PSH68_RS26135 WP_034109939.1 5716278..5716685(-) (pilG) [Pseudomonas lurida strain FP1465]
MEQHSNALRVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKAYVPAFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=785814 PSH68_RS26135 WP_034109939.1 5716278..5716685(-) (pilG) [Pseudomonas lurida strain FP1465]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGATTCGAAGACGATCCGCCGCACCGCTGAAACCTTGTT
GAAGAATGTGGGGTGCGATGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGGATTGTTGATCATCACCCGCACA
TTATTTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGCTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGTTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTGGGTGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGGGTGCGATCAAGGCCTACGTGCCTGCTTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

69.291

94.074

0.652
  vicR Streptococcus mutans UA159

38.889

93.333

0.363