Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V84_RS10630 Genome accession   NZ_CP130551
Coordinates   2147568..2147963 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain SA01-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2142568..2152963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V84_RS10605 thiE 2143166..2143807 (-) 642 WP_000483147.1 thiamine phosphate synthase -
  Q3V84_RS10610 thiM 2143809..2144600 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  Q3V84_RS10615 thiD 2144584..2145414 (-) 831 WP_303075157.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V84_RS10620 tenA 2145407..2146096 (-) 690 WP_000396067.1 thiaminase II -
  Q3V84_RS10625 sceD 2146484..2147179 (-) 696 WP_000751997.1 lytic transglycosylase SceD -
  Q3V84_RS10630 ssb 2147568..2147963 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V84_RS10635 istB 2148106..2148867 (-) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  Q3V84_RS10640 istA 2148860..2150150 (-) 1291 Protein_2058 IS21 family transposase -
  Q3V84_RS10645 - 2150361..2150801 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V84_RS10650 fabZ 2150858..2151298 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V84_RS10655 murA 2151332..2152597 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V84_RS10660 - 2152708..2152941 (-) 234 WP_000384520.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=785780 Q3V84_RS10630 WP_000932694.1 2147568..2147963(-) (ssb) [Staphylococcus aureus strain SA01-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=785780 Q3V84_RS10630 WP_000932694.1 2147568..2147963(-) (ssb) [Staphylococcus aureus strain SA01-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992