Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH93_RS15770 Genome accession   NZ_CP117462
Coordinates   3529499..3531724 (-) Length   741 a.a.
NCBI ID   WP_094065857.1    Uniprot ID   -
Organism   Pseudomonas rhodesiae strain FP1707     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3524499..3536724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH93_RS15735 (PSH93_15730) murB 3524879..3525898 (-) 1020 WP_094065860.1 UDP-N-acetylmuramate dehydrogenase -
  PSH93_RS15740 (PSH93_15735) - 3525895..3526359 (-) 465 WP_094065859.1 low molecular weight protein-tyrosine-phosphatase -
  PSH93_RS15745 (PSH93_15740) kdsB 3526359..3527123 (-) 765 WP_034098606.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH93_RS15750 (PSH93_15745) - 3527120..3527305 (-) 186 WP_011060103.1 Trm112 family protein -
  PSH93_RS15755 (PSH93_15750) lpxK 3527329..3528339 (-) 1011 WP_305376039.1 tetraacyldisaccharide 4'-kinase -
  PSH93_RS15760 (PSH93_15755) - 3528339..3528767 (-) 429 WP_034098611.1 biopolymer transporter ExbD -
  PSH93_RS15765 (PSH93_15760) exbB 3528764..3529399 (-) 636 WP_034098613.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH93_RS15770 (PSH93_15765) comA 3529499..3531724 (-) 2226 WP_094065857.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH93_RS15775 (PSH93_15770) - 3531859..3532374 (+) 516 WP_034098616.1 DUF2062 domain-containing protein -
  PSH93_RS15780 (PSH93_15775) - 3532378..3533748 (-) 1371 WP_305376041.1 sensor histidine kinase -
  PSH93_RS15785 (PSH93_15780) - 3533735..3534451 (-) 717 WP_034098618.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80207.13 Da        Isoelectric Point: 10.9753

>NTDB_id=785755 PSH93_RS15770 WP_094065857.1 3529499..3531724(-) (comA) [Pseudomonas rhodesiae strain FP1707]
MKTGMFALASGLLALVFLPALPATGWLIAMLVLALMALPFRTYPLAFFLMGLSWACFSAQWALNDRLSLKLDGQTRWVEG
WVAGLPQQTDDGVRFDLIDGRSRKARLPQRIRVSWRGGPPVRSGERWRLAISLKRPSGLLNFHGFDREAWLLARRIGATG
SVKDGERLAPARNAWRDGLRQRLLAVDAQGREAGLAALVLGDGSGLSATDWQILQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGVWPRGWPWLPWACGLAFAATLSYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNGVLILEPL
ASLQAGFWLSFAAVAVLILAFSGRLGPWSPWQVWTRPQCVIAIGLFPVLLGLGLPISMSAPLANLVAVPWISLVVLPLAL
LGTALLAVPFVGEGLLWLAGGALQGLFVGLGWLAGYAPAWVPAQVPLAAWLISLLGAVLLLLPKGVPLRLLGWPMLLLAV
FPPRESVPYGQVEVLQLDVGQGQSLILRTRNHTLVYDAGPRSGALDLGARVVLPSLKKLGVGSLDLLLLSHADADHAGGA
AAVARGMPIRRVVGGETEGLPAFLGTQPCVSGEQWQWDGVMFEMWQWPDAIGGNAKSCVLQVQANGERLLLTGDIDRDAE
RALLNSSLAVPTDWLQAPHHGSRSSSSRPFLQRLAPRSVLISRGRGNAFGHPHPQVMERYRALGSRVYDSAEQGAVRVQL
GAFAEPVVARGQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=785755 PSH93_RS15770 WP_094065857.1 3529499..3531724(-) (comA) [Pseudomonas rhodesiae strain FP1707]
ATGAAGACAGGGATGTTCGCGCTTGCATCAGGGCTGCTTGCTCTGGTTTTTCTACCGGCACTGCCCGCCACGGGCTGGCT
GATCGCCATGCTGGTGCTGGCGTTGATGGCGTTGCCATTTCGCACGTACCCGCTGGCGTTTTTTCTGATGGGGTTGAGTT
GGGCGTGTTTCAGCGCGCAGTGGGCCTTGAATGATCGGCTGTCGCTGAAGCTGGATGGGCAGACGCGTTGGGTCGAGGGC
TGGGTGGCCGGGTTACCGCAACAGACCGACGATGGCGTGCGCTTCGACCTGATCGACGGGCGGTCGCGTAAAGCCCGATT
ACCCCAGCGCATCCGCGTGTCCTGGCGCGGAGGTCCGCCCGTGCGCAGCGGTGAACGCTGGCGCTTGGCAATCAGCCTCA
AACGACCGTCCGGATTACTGAATTTTCACGGCTTTGACCGCGAAGCCTGGCTGTTGGCCCGGCGCATCGGTGCAACCGGC
TCGGTAAAGGACGGTGAGCGCCTGGCCCCGGCGCGCAATGCGTGGCGCGATGGCCTGCGTCAACGGCTGCTGGCCGTGGA
TGCCCAAGGCCGCGAGGCGGGCCTGGCCGCTTTGGTGCTGGGGGATGGCTCCGGTCTGTCCGCTACGGATTGGCAGATTC
TGCAGGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGGCAGCACATCGGCCTGTTGGCGGGGTTGATATACGGGCTG
GTTGCCGGGTTGGCTCGTTACGGAGTTTGGCCGCGAGGTTGGCCATGGCTACCCTGGGCGTGCGGCCTGGCCTTTGCCGC
TACACTCAGTTACGGCTTGCTGGCCGGGTTCGGTGTGCCGGTGCAGCGCGCGTGCGTGATGGTGGGGTTGGTGCTGCTCT
GGCGTTTGCGCTTTCGCCATCTGGGCGTGTGGTGGCCGTTGCTGCTGGCCTTCAATGGGGTGCTGATCCTGGAACCCCTG
GCCAGTCTACAGGCGGGTTTCTGGCTGTCATTTGCGGCAGTGGCGGTGCTGATCCTGGCGTTCAGCGGCCGCTTAGGACC
GTGGAGCCCTTGGCAGGTGTGGACCCGTCCGCAATGCGTGATCGCCATCGGGCTGTTTCCGGTGTTGTTGGGGCTGGGGT
TGCCCATCAGTATGAGTGCGCCGCTGGCCAATCTGGTGGCGGTGCCGTGGATCAGCCTGGTGGTGCTGCCACTGGCGCTG
CTGGGCACCGCGCTGTTGGCGGTGCCCTTCGTGGGGGAGGGTTTGTTGTGGCTGGCGGGTGGCGCGTTGCAGGGGTTATT
CGTCGGCTTGGGCTGGCTCGCCGGGTACGCGCCCGCTTGGGTACCGGCGCAGGTGCCCTTGGCGGCCTGGCTGATCAGCT
TGCTCGGCGCGGTGTTGCTGTTATTGCCCAAAGGCGTGCCGTTGCGCCTGCTGGGTTGGCCGATGTTGTTGCTGGCCGTG
TTCCCTCCTCGAGAATCGGTGCCCTATGGGCAGGTCGAGGTGCTGCAGTTGGACGTCGGTCAAGGGCAATCGCTGATTCT
GCGCACACGCAATCACACCCTGGTTTACGATGCTGGCCCACGCTCGGGAGCGCTCGACCTCGGCGCGCGCGTGGTGCTGC
CGTCGTTGAAAAAACTCGGCGTGGGCAGCTTGGACCTGCTATTGCTCAGCCATGCCGATGCCGATCACGCGGGGGGCGCG
GCCGCAGTGGCCCGAGGCATGCCGATCAGGCGCGTGGTAGGCGGCGAAACCGAGGGCTTGCCGGCGTTTTTGGGCACCCA
GCCTTGTGTCAGTGGCGAGCAGTGGCAATGGGACGGGGTCATGTTTGAAATGTGGCAGTGGCCTGATGCTATTGGCGGCA
ACGCGAAATCCTGCGTCTTGCAGGTGCAAGCCAACGGTGAGCGTCTGCTGCTGACCGGCGATATCGATCGCGACGCTGAA
CGGGCGCTGCTCAACTCGTCGCTGGCGGTGCCCACCGACTGGCTGCAAGCGCCGCATCATGGCAGTCGAAGTTCGTCCTC
CAGGCCTTTCCTGCAACGGCTGGCGCCCCGGTCTGTGCTTATTTCACGCGGGCGCGGCAACGCCTTCGGTCATCCCCATC
CGCAGGTCATGGAGCGCTATCGGGCACTCGGCAGTCGGGTCTATGACAGCGCCGAACAAGGCGCCGTACGCGTGCAATTA
GGGGCCTTTGCCGAACCGGTCGTTGCCCGTGGTCAACGGCGTTTCTGGCGCGAACGGTTACCCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60

97.166

0.583
  comA Ralstonia pseudosolanacearum GMI1000

35.176

100

0.378