Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSH64_RS25865 Genome accession   NZ_CP117460
Coordinates   5710053..5711642 (+) Length   529 a.a.
NCBI ID   WP_305479128.1    Uniprot ID   -
Organism   Pseudomonas sp. FP1742     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5705053..5716642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH64_RS25845 (PSH64_25840) pgeF 5706840..5707562 (-) 723 WP_105343806.1 peptidoglycan editing factor PgeF -
  PSH64_RS25850 (PSH64_25845) rluD 5707559..5708521 (-) 963 WP_007901932.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH64_RS25855 (PSH64_25850) - 5708673..5709695 (+) 1023 WP_105343804.1 outer membrane protein assembly factor BamD -
  PSH64_RS25860 (PSH64_25855) - 5709830..5710063 (+) 234 WP_105343802.1 PP0621 family protein -
  PSH64_RS25865 (PSH64_25860) pilS 5710053..5711642 (+) 1590 WP_305479128.1 PAS domain-containing sensor histidine kinase Regulator
  PSH64_RS25870 (PSH64_25865) pilR 5711639..5712985 (+) 1347 WP_305479129.1 sigma-54 dependent transcriptional regulator Regulator
  PSH64_RS25875 (PSH64_25870) thiO 5713005..5714105 (-) 1101 WP_105343797.1 glycine oxidase ThiO -
  PSH64_RS25880 (PSH64_25875) - 5714163..5714564 (-) 402 WP_105343795.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58715.57 Da        Isoelectric Point: 7.0405

>NTDB_id=785704 PSH64_RS25865 WP_305479128.1 5710053..5711642(+) (pilS) [Pseudomonas sp. FP1742]
MIAETPSPGNKQAQRLLRLYHLYRLSVGITLVLLISSNMDNQLLKFANDDLLRNGSWLYLVLNILLVVFLGNTRHPAQLF
SLALVDVLLLCGLFYAAGGMASAIGNLLIVSVAISNTLLRGRIGLLIAAVGALGIVGLSFILSFSHPASPSDYLQIGTLG
ALCFAAALLVQGLTRRLEVSETLAEQRASEVLSLEALNALILQRMRTGILVLDDQRRVQLANHSALTLLGQEKLDGQLVD
DYSMPLVERLQLWFNNPTLRPQSLKIASNGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLEHFVAETRENSTDR
QQIHLRIGSGDFKTLMDPNQLTQILDNLLRNAWRHSALKHDQAQVWLELFVDPDSQLPTLEVLDDGPGVAPDQRTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=785704 PSH64_RS25865 WP_305479128.1 5710053..5711642(+) (pilS) [Pseudomonas sp. FP1742]
GTGATCGCTGAGACGCCCAGTCCCGGCAACAAACAGGCCCAGCGACTGCTGCGCCTCTATCACCTCTACCGCTTAAGCGT
CGGCATCACTCTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGTTGCTGAAGTTCGCCAATGACGACCTGCTGCGCA
ATGGCAGCTGGTTGTATCTGGTGCTGAATATCCTGCTGGTGGTCTTTCTGGGGAACACCCGGCACCCCGCGCAGTTGTTC
AGCCTGGCGCTGGTTGATGTCCTGCTGCTGTGCGGCCTTTTCTACGCGGCAGGCGGCATGGCCAGTGCCATCGGCAATTT
GCTGATCGTGTCAGTGGCCATCAGCAATACCCTGCTACGCGGGCGTATCGGCCTGCTGATCGCAGCAGTCGGAGCCCTTG
GGATCGTGGGTTTGAGCTTCATCCTGAGTTTCAGCCATCCCGCCAGCCCCAGTGATTACCTGCAAATCGGCACCCTCGGC
GCCCTGTGTTTTGCCGCGGCACTGCTGGTGCAGGGCTTGACCCGACGCCTGGAGGTCAGCGAAACCCTGGCCGAACAGCG
GGCCAGCGAAGTACTCAGCCTGGAAGCGCTCAACGCACTGATCCTGCAACGCATGCGCACGGGCATTCTGGTGCTCGACG
ACCAGCGCCGGGTGCAACTGGCCAATCACAGCGCCTTGACCTTACTGGGACAGGAAAAACTGGATGGCCAGTTGGTTGAC
GACTATTCAATGCCGTTGGTCGAGCGGCTCCAACTATGGTTCAACAATCCGACTCTGCGCCCGCAAAGCCTGAAAATCGC
CAGCAACGGCCTGGAGTTGCAACCGAGCTTCATTGCCCTGGACCAAAGCCCGCACCACCAGACGCTGGTCTTTCTCGAAG
ACCTCGCCCAAATCGCCCAACAGGCGCAACAACTGAAACTCGCCGCCCTCGGTCGCCTGACCGCCGGTATTGCCCATGAG
ATCCGCAATCCGCTGGGCGCCATTAGTCATGCCGCGCAGTTACTGCAGGAATCCGAGGAACTGAACGGCGCGGATCGACG
TCTGACGCAGATTATTCAAGACCACTCTCAGCGCATGAATCGGGTTATCGAAAACGTTCTGCAACTGTCTCGCCGTCAGC
AAACCGTGCCGCAACGGCTCGATTTGAAGCCGTGGCTGGAGCATTTCGTCGCCGAAACCCGCGAAAACTCGACCGACCGT
CAGCAGATTCATCTGCGCATCGGTTCGGGAGACTTCAAAACCCTGATGGATCCGAATCAGCTGACCCAGATTCTCGACAA
TTTATTGCGCAATGCCTGGCGTCATAGCGCCCTCAAGCACGATCAGGCGCAAGTCTGGCTTGAGTTGTTTGTCGACCCCG
ACAGCCAGTTGCCGACTCTTGAAGTCCTGGACGATGGCCCCGGTGTGGCGCCGGATCAGCGCACGCACTTATTCGAACCA
TTCTTCACCACCAGCAGCCAGGGCACTGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAGGCCCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.566

100

0.607