Detailed information NTG0785705

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PSH64_RS25870
• Genome accession: NZ_CP117460
• Coordinates: 5711639..5712985 (+)
• Length: 448 a.a.
• NCBI ID: WP_305479129.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP1742
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5706639..5717985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH64_RS25845 (PSH64_25840)	pgeF	5706840..5707562 (-)	723	WP_105343806.1	peptidoglycan editing factor PgeF	-
PSH64_RS25850 (PSH64_25845)	rluD	5707559..5708521 (-)	963	WP_007901932.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PSH64_RS25855 (PSH64_25850)	-	5708673..5709695 (+)	1023	WP_105343804.1	outer membrane protein assembly factor BamD	-
PSH64_RS25860 (PSH64_25855)	-	5709830..5710063 (+)	234	WP_105343802.1	PP0621 family protein	-
PSH64_RS25865 (PSH64_25860)	pilS	5710053..5711642 (+)	1590	WP_305479128.1	PAS domain-containing sensor histidine kinase	Regulator
PSH64_RS25870 (PSH64_25865)	pilR	5711639..5712985 (+)	1347	WP_305479129.1	sigma-54 dependent transcriptional regulator	Regulator
PSH64_RS25875 (PSH64_25870)	thiO	5713005..5714105 (-)	1101	WP_105343797.1	glycine oxidase ThiO	-
PSH64_RS25880 (PSH64_25875)	-	5714163..5714564 (-)	402	WP_105343795.1	type IV pilin protein	-
PSH64_RS25885 (PSH64_25880)	-	5714580..5717702 (-)	3123	WP_305479130.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49758.17 Da
• Isoelectric Point: 6.8385

>NTDB_id=785705 PSH64_RS25870 WP_305479129.1 5711639..5712985(+) (pilR) [Pseudomonas sp. FP1742]
MNTSPRQKVLIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLAQDTFDLCLTDMRLPDGTGLALVQHIQQRYAQVP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVISALSLPAPGGASSAIDRRLLGDSLPMRSLRKQIDKLARSQA
PVYISGESGSGKELVARLIHDQGPRASRPFIPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIELLA
SNMLRRLAAGTGQPAAKLHPQALEALKNYRFPGNVRELENMIERAHTLCENKQIEASDLRLAEGNCNPDGGVPDLTQIDN
LEAYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=785705 PSH64_RS25870 WP_305479129.1 5711639..5712985(+) (pilR) [Pseudomonas sp. FP1742]
TTGAACACGAGCCCACGGCAAAAAGTCCTGATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAACCTCGCGGAAGCGCAGGCGCTGCTGGCACAGGATACGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCTGACGGCACCGGACTGGCGCTGGTACAACACATCCAGCAGCGCTATGCGCAAGTGCCG
GTGGCGATGATCACCGCCTACGGCAGCCTGGAGACCGCTATAAATGCCCTCAAGGCCGGCGCCTTCGACTTTCTGACCAA
ACCGGTCGACCTCACCCGCCTGCGTGAGCTGGTCATCAGCGCCCTGAGCTTGCCAGCGCCAGGCGGCGCCAGCAGCGCCA
TCGACCGTCGGCTGCTGGGCGACTCATTGCCAATGCGCAGCCTGCGCAAACAAATCGACAAACTGGCCCGCAGCCAGGCC
CCGGTGTATATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGACTGATCCATGACCAAGGCCCACGCGCCAG
TCGACCGTTCATCCCGGTGAACTGCGGGGCGATTCCGTCGGAATTGATGGAAAGCGAATTTTTCGGCCATCGCAAGGGCA
GTTTCAGCGGTGCCATCGAAGACAAACCCGGGCTGTTCCAGGCCGCCCATGGTGGCACCTTGTTCCTCGACGAAGTGGCC
GACCTGCCGCTGGCGATGCAGGTCAAACTGCTGCGGGCGATTCAGGAGAAAGCCGTTCGCAGCATCGGTGGGCAGCAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCCACTCATAAAGATCTCGATGCCGAAGTCGCCGCCGAACGTTTTCGTCAGG
ACCTGTACTACCGTCTGAACGTGATCGAACTGCGGGTGCCGCCCTTGCGCGAACGCCGCGACGACATTGAGCTTCTAGCC
AGCAATATGCTCAGGCGACTGGCGGCCGGCACGGGCCAACCCGCCGCAAAACTCCACCCGCAAGCCCTCGAAGCGCTGAA
AAACTACCGCTTTCCAGGGAACGTGCGGGAATTGGAGAACATGATCGAGCGGGCTCACACCTTGTGCGAGAACAAACAGA
TCGAAGCCAGCGATCTGCGCCTGGCCGAAGGCAACTGCAACCCCGATGGCGGCGTGCCGGATTTGACGCAGATCGACAAC
CTGGAAGCCTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCTCAGCGCTTGAATCTGTCATTTCGGTCAATGCGTTACAGGCTGAAGAAATTGGGTTTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.781	98.884	0.779
pilR	Acinetobacter baumannii strain A118	49.673	100	0.509