Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH64_RS22310 Genome accession   NZ_CP117460
Coordinates   4921063..4923297 (-) Length   744 a.a.
NCBI ID   WP_305478694.1    Uniprot ID   -
Organism   Pseudomonas sp. FP1742     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4916063..4928297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH64_RS22275 (PSH64_22270) murB 4916443..4917462 (-) 1020 WP_305478692.1 UDP-N-acetylmuramate dehydrogenase -
  PSH64_RS22280 (PSH64_22275) - 4917459..4917923 (-) 465 WP_105342969.1 low molecular weight protein-tyrosine-phosphatase -
  PSH64_RS22285 (PSH64_22280) kdsB 4917923..4918687 (-) 765 WP_105342967.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH64_RS22290 (PSH64_22285) - 4918684..4918869 (-) 186 WP_003179363.1 Trm112 family protein -
  PSH64_RS22295 (PSH64_22290) lpxK 4918895..4919905 (-) 1011 WP_105342965.1 tetraacyldisaccharide 4'-kinase -
  PSH64_RS22300 (PSH64_22295) - 4919905..4920333 (-) 429 WP_305478693.1 biopolymer transporter ExbD -
  PSH64_RS22305 (PSH64_22300) exbB 4920330..4920965 (-) 636 WP_162556235.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH64_RS22310 (PSH64_22305) comA 4921063..4923297 (-) 2235 WP_305478694.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH64_RS22315 (PSH64_22310) - 4923434..4923955 (+) 522 WP_105342956.1 DUF2062 domain-containing protein -
  PSH64_RS22320 (PSH64_22315) - 4924122..4924901 (-) 780 WP_105342953.1 ABC transporter permease -
  PSH64_RS22325 (PSH64_22320) - 4924898..4925830 (-) 933 WP_105342951.1 ABC transporter ATP-binding protein -
  PSH64_RS22330 (PSH64_22325) - 4925964..4926587 (-) 624 WP_305478695.1 glutathione S-transferase family protein -
  PSH64_RS22335 (PSH64_22330) - 4926631..4927290 (-) 660 WP_305478696.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81650.69 Da        Isoelectric Point: 9.9763

>NTDB_id=785699 PSH64_RS22310 WP_305478694.1 4921063..4923297(-) (comA) [Pseudomonas sp. FP1742]
MRTGMMALAVGLLALRFLPALPPTGLWLLLPVAGLMLLPFRTFPLAFLLFGFSWACANAQWALNDRLALKLDGETRWVEG
RVTGLPQQAEGVVRFELTDSQSRRSQLPRHLRLAWYGGPPVNSGERWRLAVKLKRPAGLLNPHGFDYDAWLLAQRIGATG
TVKDGQRLREAQWAWRDSVRQRLQAVDAQGRTGALTALVLGDGAGLSREDWLVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPRRLPWLPWACALAFAAALGYGLLAGFEVPVRRACLMIGLVLLWRLRFRHLGAWWPLLLALDGVLLLEPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLWVLGLPISLSGPLVNLLAVPWISLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLVDLLFKGLALMSGELPAWQPVAVPLWVWAFGTLGAFLLLLPPGVPLRPLGWPLLLLLV
FPPRHTLPEGIAEVWQLDVGQGLAILVRTRHHSLLYDAGPRFGDIDLGERVVLPSLRKLGVNGLDLMLISHADADHAGGA
RAIAGGLPVTRVLSGDPLALADELQAEGCESGQQWTWNDVRFQLWQWPSASDSNQKSCVLQIEANGERLLLTGDIDTAAE
RALLDGPLAVPTDWLQAPHHGSRSSSSMALLSTLQPKAVLISRGNGNSFGHPHPTVVARYQKRGVAIYDSAGQGAIRLQL
GRFEPPWTMLQERRFWRDRPSLSQ

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=785699 PSH64_RS22310 WP_305478694.1 4921063..4923297(-) (comA) [Pseudomonas sp. FP1742]
ATGCGCACAGGGATGATGGCGCTGGCGGTCGGTCTGCTGGCTTTGCGTTTTTTACCGGCGTTACCGCCGACGGGGTTGTG
GCTGCTATTGCCGGTAGCGGGATTGATGTTGCTGCCGTTTCGAACCTTTCCCCTGGCATTTTTGCTGTTTGGTTTCAGTT
GGGCCTGTGCGAATGCGCAGTGGGCGCTGAATGATCGCCTGGCGCTGAAGCTCGATGGCGAGACTCGCTGGGTCGAAGGT
CGGGTTACCGGGTTACCGCAGCAGGCTGAGGGCGTGGTGCGCTTCGAACTGACGGACAGTCAGTCGCGTCGCAGCCAACT
GCCTCGGCACTTGCGTCTGGCCTGGTATGGCGGGCCGCCCGTCAACAGTGGCGAGCGGTGGCGGCTGGCGGTCAAACTGA
AGCGTCCGGCCGGGCTGCTCAACCCCCACGGTTTTGATTACGACGCCTGGTTGCTGGCCCAACGCATCGGTGCCACCGGC
ACGGTCAAGGACGGCCAGCGACTGAGGGAGGCGCAATGGGCCTGGCGCGACAGTGTCCGCCAGCGTTTGCAGGCCGTGGA
TGCGCAAGGGCGAACGGGGGCGCTGACGGCGTTGGTGCTGGGGGATGGCGCCGGTCTGAGCCGTGAGGACTGGCTGGTGC
TGCAAGACACCGGCACCGTGCATCTGTTGGTGATTTCCGGGCAGCACATTGGTTTGCTGGCGGGGCTGGTGTATCTGTTG
ATCGCCGGGTTGGCGCGTTATGGCCTGTGGCCCAGGCGCTTGCCGTGGCTGCCATGGGCGTGCGCACTGGCATTCGCCGC
AGCGCTCGGTTATGGGCTGCTGGCCGGCTTCGAGGTGCCGGTGCGGCGGGCCTGCCTGATGATCGGCCTGGTGCTGCTGT
GGCGGCTACGGTTTCGTCATCTCGGGGCCTGGTGGCCGTTGTTGCTGGCGCTTGATGGCGTTTTGCTGCTGGAGCCGCTG
GCGAGCCTGCAACCGGGTTTCTGGTTGTCCTTTGCGGCAGTGGCGGTGCTGATTTTCACTTTTGGCGGGCGATTGGGCCC
GTGGCGCTGGTGGCAAACCTGGACCCGCGCCCAATGGCTGATCGCGATCGGTCTGTGCCCGCTGCTATGGGTGCTGGGGT
TGCCGATCAGTCTCAGTGGACCTCTGGTCAACTTGCTGGCGGTGCCCTGGATCAGTCTGGTGGTCTTGCCGCCGGCCTTG
CTCGGGACACTCTTGTTGCCCGTTCCTTATGTGGGCGAGGGGTTGCTGTGGTTGGCCGGCGGTCTGGTCGACCTTTTGTT
CAAGGGGTTGGCATTGATGTCCGGGGAGCTGCCCGCGTGGCAGCCGGTGGCAGTCCCGTTGTGGGTTTGGGCGTTCGGCA
CGCTAGGTGCATTTTTGCTGTTACTGCCGCCAGGCGTGCCGTTGCGCCCGTTGGGCTGGCCGTTGTTGCTGTTGCTGGTT
TTTCCGCCCCGGCACACGCTGCCTGAAGGCATCGCCGAGGTCTGGCAACTGGATGTCGGCCAGGGGTTGGCCATTCTGGT
GCGCACCCGCCATCACTCCTTGCTGTATGACGCCGGGCCACGGTTTGGCGATATCGACCTGGGGGAGCGGGTGGTGTTGC
CATCATTGCGCAAGCTGGGGGTGAATGGACTCGATCTGATGCTGATCAGCCACGCCGACGCCGATCATGCTGGCGGCGCG
CGAGCCATTGCCGGGGGATTGCCGGTGACGCGGGTGCTGAGCGGCGATCCACTGGCCCTTGCAGACGAACTGCAGGCCGA
GGGGTGCGAGAGCGGTCAGCAGTGGACCTGGAACGACGTGCGGTTCCAACTCTGGCAGTGGCCGTCGGCCAGCGACAGCA
ATCAGAAATCCTGCGTGCTGCAGATCGAGGCTAATGGCGAACGCTTGCTGCTGACCGGCGATATCGATACCGCGGCGGAG
CGGGCGCTGCTCGACGGGCCATTGGCGGTGCCGACGGATTGGCTGCAGGCCCCGCACCATGGCAGTCGCAGTTCGTCTTC
GATGGCATTGCTCAGCACCTTGCAACCCAAAGCGGTGTTGATCTCCCGTGGCAACGGCAATTCTTTCGGCCATCCTCATC
CCACGGTCGTGGCGCGCTATCAAAAGCGTGGCGTGGCGATCTACGACAGCGCCGGGCAGGGTGCCATTCGTCTACAACTG
GGGCGCTTCGAACCGCCCTGGACGATGCTTCAGGAACGGCGTTTCTGGCGCGATCGGCCATCATTGAGCCAGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.056

96.774

0.61