Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH64_RS22305 Genome accession   NZ_CP117460
Coordinates   4920330..4920965 (-) Length   211 a.a.
NCBI ID   WP_162556235.1    Uniprot ID   -
Organism   Pseudomonas sp. FP1742     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4915330..4925965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH64_RS22270 (PSH64_22265) - 4915730..4916200 (-) 471 WP_105342973.1 (2Fe-2S)-binding protein -
  PSH64_RS22275 (PSH64_22270) murB 4916443..4917462 (-) 1020 WP_305478692.1 UDP-N-acetylmuramate dehydrogenase -
  PSH64_RS22280 (PSH64_22275) - 4917459..4917923 (-) 465 WP_105342969.1 low molecular weight protein-tyrosine-phosphatase -
  PSH64_RS22285 (PSH64_22280) kdsB 4917923..4918687 (-) 765 WP_105342967.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH64_RS22290 (PSH64_22285) - 4918684..4918869 (-) 186 WP_003179363.1 Trm112 family protein -
  PSH64_RS22295 (PSH64_22290) lpxK 4918895..4919905 (-) 1011 WP_105342965.1 tetraacyldisaccharide 4'-kinase -
  PSH64_RS22300 (PSH64_22295) - 4919905..4920333 (-) 429 WP_305478693.1 biopolymer transporter ExbD -
  PSH64_RS22305 (PSH64_22300) exbB 4920330..4920965 (-) 636 WP_162556235.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH64_RS22310 (PSH64_22305) comA 4921063..4923297 (-) 2235 WP_305478694.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH64_RS22315 (PSH64_22310) - 4923434..4923955 (+) 522 WP_105342956.1 DUF2062 domain-containing protein -
  PSH64_RS22320 (PSH64_22315) - 4924122..4924901 (-) 780 WP_105342953.1 ABC transporter permease -
  PSH64_RS22325 (PSH64_22320) - 4924898..4925830 (-) 933 WP_105342951.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22897.12 Da        Isoelectric Point: 6.8770

>NTDB_id=785698 PSH64_RS22305 WP_162556235.1 4920330..4920965(-) (exbB) [Pseudomonas sp. FP1742]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785698 PSH64_RS22305 WP_162556235.1 4920330..4920965(-) (exbB) [Pseudomonas sp. FP1742]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGCGCCAGTCGCGTGACCCCGGAGCACTTGCTCGGGCAGGTGTGGGTCTGGATCAAGGACA
AACAACTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCCCCGCTGGGCGAGATCCTGGCTGCCGGTCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAGGCCGCCGCGCGGGTGATTCATGAACTTGAACGCTACAT
CAACGCCCTGGGCACCATCGCCGCCATGGCCCCGTTACTGGGGCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTGCGTTCATGGGCACAGGCATGGGCACCAACGCCGCGGTGCTGGCCGGGGGGATTTCCAAGGCGCTGATCACCACCGCC
GCGGGCCTGATGGTCGGTATCCCGGCCGTGTTCTTCCACCGCTTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTACAGGGCGATCGCGACGTGGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858