Detailed information NTG0078562

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: LLL8_RS10235
• Genome accession: NZ_AP025700
• Coordinates: 2098787..2099860 (+)
• Length: 357 a.a.
• NCBI ID: WP_058203751.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain L8
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2093787..2104860

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLL8_RS10210 (LLL8_19980)	pgsA	2093895..2094467 (-)	573	WP_012898490.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LLL8_RS10215 (LLL8_19990)	-	2094508..2095404 (-)	897	WP_033900820.1	RodZ family helix-turn-helix domain-containing protein	-
LLL8_RS10220 (LLL8_20000)	-	2095668..2096951 (-)	1284	WP_251899876.1	pitrilysin family protein	-
LLL8_RS10225 (LLL8_20010)	-	2096941..2098227 (-)	1287	WP_251899877.1	pitrilysin family protein	-
LLL8_RS10230 (LLL8_20020)	yaaA	2098425..2098787 (+)	363	WP_012898492.1	S4 domain-containing protein YaaA	-
LLL8_RS10235 (LLL8_20030)	recF	2098787..2099860 (+)	1074	WP_058203751.1	DNA replication/repair protein RecF	Machinery gene
LLL8_RS10240 (LLL8_20040)	-	2099950..2100318 (-)	369	WP_081213734.1	carboxymuconolactone decarboxylase family protein	-
LLL8_RS10245 (LLL8_20050)	-	2100396..2100773 (+)	378	WP_015427093.1	MerR family transcriptional regulator	-
LLL8_RS10250 (LLL8_20060)	-	2100785..2101741 (-)	957	WP_251899878.1	alpha/beta hydrolase	-
LLL8_RS10255 (LLL8_20070)	galE	2101862..2102842 (-)	981	WP_017865083.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 357 a.a.
• Molecular weight: 41228.10 Da
• Isoelectric Point: 6.8652

>NTDB_id=78562 LLL8_RS10235 WP_058203751.1 2098787..2099860(+) (recF) [Lactococcus lactis strain L8]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQE

Nucleotide

• Length: 1074 bp

>NTDB_id=78562 LLL8_RS10235 WP_058203751.1 2098787..2099860(+) (recF) [Lactococcus lactis strain L8]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCATCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGATAAAGAGCTCATTTCTTGGTCGCAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTGGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGACCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACGTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.555
recF	Bacillus subtilis subsp. subtilis str. 168	45.977	97.479	0.448