Detailed information NTG0785616

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PSH71_RS21715
• Genome accession: NZ_CP117457
• Coordinates: 4911449..4913695 (-)
• Length: 748 a.a.
• NCBI ID: WP_039013655.1
• Uniprot ID: -
• Organism: Pseudomonas brassicacearum strain FP1843
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4906449..4918695

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH71_RS21680 (PSH71_21675)	murB	4906832..4907851 (-)	1020	WP_003204282.1	UDP-N-acetylmuramate dehydrogenase	-
PSH71_RS21685 (PSH71_21680)	-	4907848..4908312 (-)	465	WP_013694001.1	low molecular weight protein-tyrosine-phosphatase	-
PSH71_RS21690 (PSH71_21685)	kdsB	4908312..4909076 (-)	765	WP_003204286.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PSH71_RS21695 (PSH71_21690)	-	4909073..4909258 (-)	186	WP_003179363.1	Trm112 family protein	-
PSH71_RS21700 (PSH71_21695)	lpxK	4909282..4910292 (-)	1011	WP_039013653.1	tetraacyldisaccharide 4'-kinase	-
PSH71_RS21705 (PSH71_21700)	-	4910292..4910720 (-)	429	WP_013694002.1	biopolymer transporter ExbD	-
PSH71_RS21710 (PSH71_21705)	exbB	4910717..4911352 (-)	636	WP_003204294.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PSH71_RS21715 (PSH71_21710)	comA	4911449..4913695 (-)	2247	WP_039013655.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PSH71_RS21720 (PSH71_21715)	-	4913840..4914355 (+)	516	WP_003204298.1	DUF2062 domain-containing protein	-
PSH71_RS21725 (PSH71_21720)	-	4914442..4915221 (-)	780	WP_003204300.1	ABC transporter permease	-
PSH71_RS21730 (PSH71_21725)	-	4915224..4916156 (-)	933	WP_003204301.1	ABC transporter ATP-binding protein	-
PSH71_RS21735 (PSH71_21730)	-	4916293..4916916 (-)	624	WP_003204303.1	glutathione S-transferase family protein	-
PSH71_RS21740 (PSH71_21735)	-	4916962..4917621 (-)	660	WP_013694005.1	transglutaminase family protein	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 80999.36 Da
• Isoelectric Point: 9.6855

>NTDB_id=785616 PSH71_RS21715 WP_039013655.1 4911449..4913695(-) (comA) [Pseudomonas brassicacearum strain FP1843]
MRTGLVALALGLLAPIFLPALPPIWLITAMPVLALMVLPFRTYPLGFFLFGLAWACLSAQCALDDRLPIALDGETRWVEG
RVIGLPQQGEGVMRFELADVHSRRTRLPTAMRLAWFGGPPVNSGERWRLAVKLKRPSGLLNPHGFDYAAWLLSRGIGATG
TIKDGHLLQAARGAWRDEVRQALAQVDAHGRSGALAALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPVGLAWLPWACGLAFCAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKQPDPWWAWLLAFVGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVALGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPLAL
LGTALLPVPLMGEGLLWIAGGLLDLLFKGLALVAGRMPAWVPAAVPPWALGIAAFGAFLLLLPKGVPLRVLGWPMVLLMV
FPPQEHLPQGHAEIWQLDVGQGLAVLVRTRRHALLYDAGPRFGEADAGERVVLPTLRKLGVRRLDLMLLSHADADHAGGA
RAVRNGLPTLEVISGDPDALPAELLAGPCDSGRRWEWDGVGFELWRWASAVESNQKSCVLVVEAGGERLLLTGDIDTPAE
RALLDEALAVPIQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRSGLAIYDSAEQGAIRLLL
GAFGVPRTEAGHRRYWRDPPAVGPPGQY

Nucleotide

• Length: 2247 bp

>NTDB_id=785616 PSH71_RS21715 WP_039013655.1 4911449..4913695(-) (comA) [Pseudomonas brassicacearum strain FP1843]
ATGCGCACAGGGTTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGATTTTTTTGCCGGCACTGCCGCCGATATGGCTGAT
TACAGCCATGCCGGTGCTGGCGCTGATGGTGTTGCCGTTTCGAACCTACCCGCTGGGTTTTTTCCTGTTCGGGCTGGCCT
GGGCCTGCCTGTCGGCGCAGTGTGCGCTGGACGACCGGTTACCCATCGCGCTTGACGGCGAAACCCGCTGGGTCGAGGGT
CGAGTGATCGGTTTGCCGCAACAGGGCGAAGGCGTGATGCGCTTCGAACTGGCCGATGTCCATTCACGCCGTACCCGTCT
ACCGACGGCGATGCGTCTCGCCTGGTTCGGTGGTCCGCCGGTCAACAGCGGCGAACGATGGCGATTGGCGGTGAAACTCA
AGCGGCCCAGTGGGCTGCTGAACCCGCACGGCTTCGACTATGCCGCCTGGTTGCTGAGCCGCGGCATCGGCGCGACCGGT
ACCATCAAGGATGGCCATCTCCTGCAAGCGGCCCGGGGGGCCTGGCGTGACGAGGTGCGCCAGGCGCTGGCACAGGTCGA
TGCCCACGGCCGCTCCGGTGCGCTGGCGGCTCTGGTGCTGGGCGACGGCGGCGGGCTGAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTCCACTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTCGCCGGCCTGGTGTACCTGTTG
GTGGCCGGCGCGGCGCGTTATGGTCTTTGGCCGGTGGGTCTGGCCTGGTTGCCTTGGGCCTGTGGGCTGGCCTTCTGTGC
CGCCCTGGGCTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGGCGGGCCTGCGCGATGATCGGCCTGGTGCTGCTGT
GGCGCTTGCGTTTCAAACAGCCAGATCCGTGGTGGGCATGGCTGCTGGCCTTCGTCGGGGTGCTGGTGTTCGACCCGCTT
GCCAGCTTGCGGCCGGGGTTCTGGTTGTCGTTTGCGGCCGTGGCCATATTGATGTTCACCTTTGGCGCTCGCCTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGGTCGCGCTCGGCCTGTGTCCGTTGTTGTTGATCGTGGGTT
TGCCGGTCAGCCTCAGCGGGCCGTTGGTGAACCTGCTCGCGGTGCCCTGGATCAGCCTGTTGGTATTGCCGCTGGCGCTG
CTTGGCACGGCATTGTTGCCGGTGCCGCTCATGGGCGAAGGCCTGCTGTGGATTGCCGGTGGGCTGCTCGATCTGCTGTT
CAAGGGGCTGGCACTGGTTGCCGGACGAATGCCGGCCTGGGTTCCTGCCGCAGTCCCGCCCTGGGCCTTGGGCATCGCCG
CCTTCGGTGCTTTTTTGCTGCTGTTGCCCAAAGGTGTGCCGCTACGTGTACTGGGGTGGCCGATGGTGTTGCTGATGGTT
TTTCCACCGCAAGAACACCTGCCGCAAGGGCACGCCGAGATCTGGCAACTGGACGTGGGCCAAGGGCTGGCGGTGCTGGT
GCGGACCCGGCGGCACGCCCTGCTTTACGACGCCGGGCCGCGCTTTGGCGAGGCTGACGCGGGCGAGCGGGTCGTCCTGC
CGACCTTGCGCAAACTGGGTGTGCGCCGCTTGGACCTGATGTTGCTCAGCCATGCCGACGCCGATCACGCTGGCGGTGCC
CGCGCCGTGCGCAATGGGCTGCCGACGCTGGAAGTGATCAGCGGCGATCCGGACGCGCTGCCCGCCGAACTGCTGGCCGG
GCCTTGCGACAGTGGCAGGCGCTGGGAATGGGATGGGGTCGGGTTCGAACTGTGGCGGTGGGCCTCTGCCGTCGAGAGCA
ACCAGAAGTCCTGTGTCTTGGTGGTGGAGGCGGGCGGTGAACGCCTGCTGCTGACCGGCGATATCGACACCCCTGCCGAG
CGCGCCTTGCTCGACGAGGCCCTGGCCGTGCCGATCCAGTGGCTGGCCGCGCCGCATCACGGCAGTCGCAGTTCGTCGTC
GATGGCGTTGCTGTCGCGTCTCAAGCCGCATTCAGTATTGATCTCCCGAGGGCAGGGCAACGCATTCGGCCACCCTCATC
CCCAGGTGATGGCCCGGTATCGGCGCTCAGGCCTGGCGATCTACGACAGCGCCGAGCAGGGCGCCATTCGTCTGCTACTG
GGGGCTTTCGGGGTGCCGCGCACCGAGGCCGGGCACCGCCGTTATTGGCGTGATCCGCCAGCCGTCGGGCCACCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Domain of unknown function (DUF4131) (DUF4131) (23-165)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.732	95.722	0.591
comA	Ralstonia pseudosolanacearum GMI1000	32.038	100	0.364