Detailed information NTG0785556

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH89_RS03960
• Genome accession: NZ_CP117455
• Coordinates: 905214..906080 (-)
• Length: 288 a.a.
• NCBI ID: WP_020301293.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP1911
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 900214..911080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH89_RS03925 (PSH89_03925)	-	901085..902383 (-)	1299	WP_032903990.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH89_RS03930 (PSH89_03930)	-	902444..902617 (-)	174	WP_014716869.1	DUF3094 family protein	-
PSH89_RS03935 (PSH89_03935)	-	902672..903301 (-)	630	WP_003188431.1	DUF1780 domain-containing protein	-
PSH89_RS03940 (PSH89_03940)	-	903431..904120 (+)	690	WP_038448869.1	energy-coupling factor ABC transporter permease	-
PSH89_RS03945 (PSH89_03945)	-	904185..904400 (+)	216	WP_003171680.1	hypothetical protein	-
PSH89_RS03950 (PSH89_03950)	yacG	904397..904597 (-)	201	WP_038448871.1	DNA gyrase inhibitor YacG	-
PSH89_RS03955 (PSH89_03955)	coaE	904594..905217 (-)	624	WP_032903992.1	dephospho-CoA kinase	-
PSH89_RS03960 (PSH89_03960)	pilD	905214..906080 (-)	867	WP_020301293.1	A24 family peptidase	Machinery gene
PSH89_RS03965 (PSH89_03965)	pilC	906077..907285 (-)	1209	WP_038448874.1	type II secretion system F family protein	Machinery gene
PSH89_RS03970 (PSH89_03970)	-	907487..907900 (+)	414	WP_014716874.1	pilin	-
PSH89_RS03980 (PSH89_03980)	-	908190..908495 (+)	306	WP_014716875.1	DUF6388 family protein	-
PSH89_RS03985 (PSH89_03985)	nadC	908545..909393 (-)	849	WP_014716876.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31759.99 Da
• Isoelectric Point: 7.3272

>NTDB_id=785556 PSH89_RS03960 WP_020301293.1 905214..906080(-) (pilD) [Pseudomonas sp. FP1911]
MSLLLSEHPWAFVGLALVLGLIVGSFLNVLAWRLPKMLEREWRAQAHEILDLPAEPGGPAYNLMRPNSCCPRCNQPIRPW
ENIPVLSYLLLRGHCAHCREPIGLRYPLTELACALISTAVAWHFGFGWQAGAVMLLSWGLLGMSLIDLDHQLLPDVLVLP
LLWLGLILNSADLLTPLPDAVWGAVIGYMSLWCLFWLFKLATGRDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVL
AGLILLRLRKAQVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=785556 PSH89_RS03960 WP_020301293.1 905214..906080(-) (pilD) [Pseudomonas sp. FP1911]
TTGAGCCTGCTGCTGAGCGAACATCCCTGGGCGTTTGTTGGCCTGGCGCTGGTGTTGGGCCTGATCGTCGGTAGCTTCCT
CAATGTGCTGGCGTGGCGCCTGCCCAAAATGCTCGAGCGGGAATGGCGTGCCCAGGCCCATGAGATTCTCGACTTGCCAG
CCGAGCCCGGTGGGCCGGCCTATAACCTGATGCGTCCGAACTCCTGCTGCCCGCGCTGCAATCAACCGATTCGGCCTTGG
GAAAATATCCCGGTGCTCAGCTACCTGTTGCTCCGGGGGCATTGTGCCCACTGCCGTGAGCCCATCGGCCTGCGTTACCC
CCTCACCGAACTCGCGTGCGCGCTGATCTCAACCGCTGTCGCCTGGCACTTCGGCTTCGGCTGGCAAGCCGGCGCGGTGA
TGCTGTTGAGTTGGGGCTTGCTGGGCATGAGCCTGATTGATCTGGACCACCAACTGCTGCCGGATGTGCTGGTGCTGCCG
CTGCTATGGCTGGGGCTGATCCTCAACAGTGCTGACCTGTTGACGCCACTGCCCGATGCAGTGTGGGGCGCGGTTATCGG
CTACATGAGCTTGTGGTGCCTGTTCTGGCTGTTCAAGCTGGCCACCGGCAGAGACGGCATGGGCCATGGCGACTTCAAGT
TATTGGCCTTGCTGGGAGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGATGGCCTCGCTGCTGGGCGTGCTT
GCCGGGCTGATCCTGCTGCGTTTGCGTAAGGCCCAGGTGTCAGCGCCGATGCCGTTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.297	98.264	0.514
pilD	Vibrio campbellii strain DS40M4	49.648	98.611	0.49
pilD	Neisseria gonorrhoeae MS11	49.63	93.75	0.465
pilD	Acinetobacter baumannii D1279779	47.619	94.792	0.451
pilD	Acinetobacter nosocomialis M2	46.886	94.792	0.444