Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSH97_RS23930 Genome accession   NZ_CP117454
Coordinates   5276620..5278209 (+) Length   529 a.a.
NCBI ID   WP_305446950.1    Uniprot ID   -
Organism   Pseudomonas cucumis strain FP1935     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5271620..5283209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH97_RS23910 (PSH97_23905) pgeF 5273401..5274126 (-) 726 WP_305446947.1 peptidoglycan editing factor PgeF -
  PSH97_RS23915 (PSH97_23910) rluD 5274123..5275085 (-) 963 WP_007901932.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH97_RS23920 (PSH97_23915) - 5275238..5276260 (+) 1023 WP_305446948.1 outer membrane protein assembly factor BamD -
  PSH97_RS23925 (PSH97_23920) - 5276397..5276630 (+) 234 WP_305446949.1 PP0621 family protein -
  PSH97_RS23930 (PSH97_23925) pilS 5276620..5278209 (+) 1590 WP_305446950.1 PAS domain-containing sensor histidine kinase Regulator
  PSH97_RS23935 (PSH97_23930) pilR 5278212..5279552 (+) 1341 WP_305446951.1 sigma-54 dependent transcriptional regulator Regulator
  PSH97_RS23940 (PSH97_23935) thiO 5279610..5280710 (-) 1101 WP_305446952.1 glycine oxidase ThiO -
  PSH97_RS23945 (PSH97_23940) - 5280767..5281168 (-) 402 WP_305446953.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58621.41 Da        Isoelectric Point: 6.9711

>NTDB_id=785544 PSH97_RS23930 WP_305446950.1 5276620..5278209(+) (pilS) [Pseudomonas cucumis strain FP1935]
MIAETSSPGNKQARRLLRLYHLYRLSVGITLVLLISSNMDNQLLTFANDDLLRNGSWLYLVLNILLVVFLGNTRRPAQLF
SLTLVDVLLLCGLFYAAGGVASAIGNLLIVSVAIGNTLLHGRIGLLIAAVGALGIVGLSFLLSFSHPASPNDYLQVGTLG
ALCFAAALLVQGLIRRLEVSETLAEQRASEVLGLEALNALILQRMRTGILVLDDQRRVQLANHSALTLLGQEKLDGQLID
DHSMPLVERLQLWFNNPTLRPQSLKIASNGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLRPWLEHFVAETREGATER
QQIHLHIGSGDFKTLMDPNQLTQILDNLLRNAWRHSALNHDRAQAWLELFIDTESQLPTLEVLDDGPGVAPDQRSHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=785544 PSH97_RS23930 WP_305446950.1 5276620..5278209(+) (pilS) [Pseudomonas cucumis strain FP1935]
GTGATCGCTGAGACGTCCAGTCCCGGCAACAAACAGGCCCGGCGACTGCTGCGCCTCTATCACCTCTACCGCTTAAGCGT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGTTGCTGACGTTCGCCAATGACGACCTGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTCTTTCTGGGGAACACTCGGCGTCCGGCGCAGCTGTTC
AGCCTGACGCTGGTCGATGTCCTGCTGCTGTGCGGCCTGTTCTACGCCGCAGGCGGCGTCGCCAGCGCCATCGGCAACTT
GCTGATCGTGTCGGTGGCCATCGGCAATACCCTGCTGCACGGACGAATCGGCCTGTTGATTGCTGCGGTCGGCGCCCTCG
GCATCGTGGGTTTGAGTTTCCTACTGAGCTTCAGCCATCCCGCCAGCCCCAACGATTACCTGCAAGTCGGCACCCTCGGC
GCCCTGTGTTTTGCTGCGGCATTGCTGGTACAAGGCTTGATCCGACGCCTGGAAGTCAGCGAAACCCTCGCCGAGCAGCG
GGCCAGCGAAGTGCTCGGCCTCGAAGCCCTCAACGCACTGATCCTGCAACGCATGCGCACAGGCATTTTGGTGCTCGACG
ACCAACGGCGTGTGCAACTGGCCAATCACAGCGCGTTGACCTTGCTGGGCCAGGAAAAACTCGATGGCCAGTTGATCGAC
GACCACTCGATGCCGTTGGTCGAGCGGCTCCAACTGTGGTTCAACAATCCGACTTTGCGCCCGCAAAGCTTGAAAATCGC
CAGTAATGGGCTGGAGCTGCAACCAAGCTTTATTGCCCTGGACCAAAGCCCGCACCACCAGACGCTGGTTTTTCTCGAAG
ACCTCGCCCAAATCGCCCAACAGGCCCAGCAACTGAAACTCGCCGCCCTCGGTCGCCTGACTGCCGGTATTGCTCATGAG
ATCCGCAATCCACTGGGCGCCATTAGTCATGCCGCGCAGTTACTGCAGGAATCCGAGGAACTGAACGGCGCGGATCGGCG
TCTGACACAGATTATTCAAGACCACTCTCAGCGAATGAATCGGGTAATCGAAAACGTCCTGCAACTGTCCCGTCGCCAGC
AAACCGTGCCACAACGGCTGGATCTGCGACCGTGGCTGGAGCATTTCGTCGCTGAAACCCGCGAAGGGGCGACCGAACGT
CAGCAAATTCACCTGCACATCGGTTCCGGAGACTTCAAAACCCTGATGGATCCGAATCAGCTGACCCAGATTCTCGACAA
TCTGTTACGCAATGCCTGGCGTCATAGCGCCCTGAACCATGATCGGGCGCAGGCCTGGCTCGAGTTGTTTATTGATACGG
AAAGCCAGCTGCCGACCCTTGAAGTCCTGGACGATGGCCCCGGCGTGGCGCCGGACCAGCGCTCGCACTTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGTACTGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603