Detailed information NTG0785537

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PSH97_RS20745
• Genome accession: NZ_CP117454
• Coordinates: 4583775..4586009 (-)
• Length: 744 a.a.
• NCBI ID: WP_305446506.1
• Uniprot ID: -
• Organism: Pseudomonas cucumis strain FP1935
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4578775..4591009

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH97_RS20710 (PSH97_20705)	murB	4579156..4580175 (-)	1020	WP_305446502.1	UDP-N-acetylmuramate dehydrogenase	-
PSH97_RS20715 (PSH97_20710)	-	4580172..4580636 (-)	465	WP_305446503.1	low molecular weight protein-tyrosine-phosphatase	-
PSH97_RS20720 (PSH97_20715)	kdsB	4580636..4581400 (-)	765	WP_305446504.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PSH97_RS20725 (PSH97_20720)	-	4581397..4581582 (-)	186	WP_003179363.1	Trm112 family protein	-
PSH97_RS20730 (PSH97_20725)	lpxK	4581608..4582618 (-)	1011	WP_305446505.1	tetraacyldisaccharide 4'-kinase	-
PSH97_RS20735 (PSH97_20730)	-	4582618..4583046 (-)	429	WP_052964865.1	biopolymer transporter ExbD	-
PSH97_RS20740 (PSH97_20735)	exbB	4583043..4583678 (-)	636	WP_008067747.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PSH97_RS20745 (PSH97_20740)	comA	4583775..4586009 (-)	2235	WP_305446506.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PSH97_RS20750 (PSH97_20745)	-	4586146..4586667 (+)	522	WP_305446507.1	DUF2062 domain-containing protein	-
PSH97_RS20755 (PSH97_20750)	-	4586759..4587538 (-)	780	WP_305446508.1	ABC transporter permease	-
PSH97_RS20760 (PSH97_20755)	-	4587535..4588467 (-)	933	WP_305446509.1	ABC transporter ATP-binding protein	-
PSH97_RS20765 (PSH97_20760)	-	4588601..4589224 (-)	624	WP_305446510.1	glutathione S-transferase family protein	-
PSH97_RS20770 (PSH97_20765)	-	4589268..4589927 (-)	660	WP_305446511.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81486.77 Da
• Isoelectric Point: 10.3965

>NTDB_id=785537 PSH97_RS20745 WP_305446506.1 4583775..4586009(-) (comA) [Pseudomonas cucumis strain FP1935]
MRTGMMALALGLLALRFLPALPPVWLWLLLPVAGLMLLPFRTIPLAFFLFGFSWAGANAQWAMNDRLALKLDGETRWVVG
RVTGLPQQADEVVRFELTDSQSRRTKLPGHLRLAWYGGPPVNSGEHWRLAVKLKRPAGLLNPHGFDYDAWLLARHIGATG
TVKDGQRLREAQWAWRDGIRQRLQVVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGVVYLL
IAGLARYGVWPKRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACLMIGLVLLWRLRFRHLGAWWPLLLALDGVLLLDPL
ASLQPGFWLSFAAVAVLILTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPLANLLAVPWVSLVVLPPAL
LGTMLLPVPYVGEGLLWLAGGLIDLLFKGLALIAGQLPAWIPVAVPLWVWALGTLGAFVLLLPRGVPLRPLGWPMLLLLV
FPPRHTLPEGMAEVWQLDVGQGLAILVRTRHHTLLYDAGPRFGDIDLGERVVLPSLRKLGVSSLDLMLISHADADHAGGA
RAVANAIPVKQVLSGDHLALPDQLHAEGCESGQQWAWDGVKFQLWQWPSASDSNQKSCVLQVEANGERLLLTGDIDAAAE
RALLDGPLAVRTDWLQAPHHGSRSSSSVALLSALQPKAVLISRGNGNSFGHPHPTVVARYQKRGVAIYDSAEQGAIRLQL
GRFRPPWTMLQERRFWRGPPLSSQ

Nucleotide

• Length: 2235 bp

>NTDB_id=785537 PSH97_RS20745 WP_305446506.1 4583775..4586009(-) (comA) [Pseudomonas cucumis strain FP1935]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGCTGGCCTTGCGTTTTTTACCGGCATTACCGCCGGTCTGGTTGTG
GCTGTTGTTACCGGTAGCGGGTTTGATGTTGCTGCCGTTTCGAACTATTCCCTTGGCATTTTTTCTGTTCGGTTTCAGTT
GGGCGGGCGCGAATGCACAGTGGGCGATGAATGATCGCCTGGCGCTGAAGCTCGATGGTGAGACGCGCTGGGTCGTAGGT
CGTGTGACCGGGTTGCCGCAGCAGGCCGACGAGGTGGTGCGTTTCGAACTGACGGACAGTCAGTCCCGTCGCACCAAGCT
GCCTGGGCACCTGCGCCTGGCCTGGTATGGCGGGCCTCCCGTCAACAGCGGCGAACATTGGCGGCTGGCCGTCAAATTGA
AGCGTCCTGCCGGGTTGCTCAACCCGCATGGGTTCGATTACGACGCCTGGCTACTGGCCCGGCACATCGGCGCCACCGGA
ACCGTCAAGGACGGCCAGCGCCTGAGGGAGGCGCAGTGGGCCTGGCGCGACGGCATCCGTCAGCGTTTGCAGGTCGTGGA
TGCCCAGGGGCGAACGGGCGCGCTGACGGCGTTGGTGCTGGGGGATGGCGCCGGGCTGAGTCGTGAGGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATCTGTTGGTGATTTCCGGGCAGCACATCGGCCTGCTGGCGGGGGTGGTGTATCTGCTG
ATTGCCGGATTGGCGCGTTATGGTGTGTGGCCCAAGCGCTTGCCGTGGCTGCCATGGGCGTGCGGGCTGGCGTTTGCGGC
GGCGCTCGGTTATGGGCTGCTGGCCGGCTTCGAGGTGCCGGTGCGCCGGGCCTGCCTGATGATCGGTCTGGTGCTGTTGT
GGCGACTACGGTTTCGTCACCTCGGCGCATGGTGGCCGTTATTGCTGGCGCTTGACGGTGTTTTGCTGCTGGATCCGCTG
GCGAGCCTGCAACCGGGTTTCTGGTTGTCCTTTGCGGCGGTGGCGGTGCTGATTCTCACCTTCGGCGGGCGATTGGGTCC
GTGGCGTTGGTGGCAAACCTGGACTCGTGCCCAGTGGCTGATCGCGATCGGTTTGTGTCCGCTGCTGTTGGTGCTGGGGT
TGCCGATCAGTCTCAGTGGGCCACTGGCCAATTTGCTCGCAGTGCCCTGGGTCAGTCTGGTGGTCCTGCCGCCAGCTTTG
CTTGGGACGATGTTGTTGCCCGTTCCTTATGTGGGCGAAGGATTGCTGTGGCTGGCCGGCGGTCTGATCGATCTTTTGTT
CAAGGGGTTGGCGTTGATAGCGGGGCAATTGCCCGCATGGATACCAGTGGCGGTCCCGTTGTGGGTATGGGCGCTCGGCA
CGCTGGGCGCCTTTGTGCTGTTGCTGCCGCGAGGCGTGCCGTTGCGCCCGTTGGGTTGGCCGATGTTGCTGTTACTGGTT
TTTCCGCCCCGACACACGTTGCCTGAAGGCATGGCCGAGGTTTGGCAGCTGGATGTCGGTCAGGGTTTGGCGATCCTGGT
GCGTACCCGCCATCACACCTTGCTGTATGACGCCGGGCCACGGTTCGGCGATATCGACCTGGGTGAGCGGGTGGTGCTGC
CATCATTGCGCAAACTGGGTGTGAGCAGCCTTGATCTGATGCTGATCAGCCACGCCGATGCCGATCACGCCGGCGGTGCG
CGAGCAGTTGCCAACGCAATACCGGTGAAGCAAGTACTCAGTGGCGATCACTTGGCCCTGCCAGATCAACTCCACGCCGA
GGGCTGCGAGAGTGGTCAGCAATGGGCCTGGGACGGCGTGAAGTTTCAACTCTGGCAGTGGCCGTCAGCCAGCGACAGCA
ATCAGAAATCCTGCGTGCTACAGGTCGAAGCCAACGGCGAGCGCTTGCTGCTGACCGGCGACATCGATGCCGCAGCCGAG
CGGGCGCTGCTCGACGGTCCATTGGCAGTGCGGACGGATTGGTTGCAGGCCCCGCACCATGGCAGTCGCAGTTCGTCTTC
GGTGGCATTGCTCAGCGCCTTGCAACCCAAAGCGGTATTGATCTCCCGTGGTAACGGCAATTCTTTCGGCCATCCCCATC
CCACGGTTGTGGCGCGCTATCAAAAACGCGGTGTGGCGATCTACGACAGCGCCGAGCAAGGTGCCATTCGTCTGCAACTG
GGACGCTTCAGGCCGCCGTGGACGATGCTTCAAGAACGGCGCTTCTGGCGCGGTCCGCCACTATCCAGCCAGTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.196	96.102	0.617
comA	Ralstonia pseudosolanacearum GMI1000	34.236	100	0.374