Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH78_RS18785 Genome accession   NZ_CP117452
Coordinates   4139743..4141989 (-) Length   748 a.a.
NCBI ID   WP_305496070.1    Uniprot ID   -
Organism   Pseudomonas sp. FP198     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4134743..4146989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH78_RS18750 (PSH78_18750) murB 4135128..4136147 (-) 1020 WP_305496064.1 UDP-N-acetylmuramate dehydrogenase -
  PSH78_RS18755 (PSH78_18755) - 4136144..4136608 (-) 465 WP_305496065.1 low molecular weight protein-tyrosine-phosphatase -
  PSH78_RS18760 (PSH78_18760) kdsB 4136608..4137372 (-) 765 WP_305496066.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH78_RS18765 (PSH78_18765) - 4137369..4137554 (-) 186 WP_003179363.1 Trm112 family protein -
  PSH78_RS18770 (PSH78_18770) lpxK 4137577..4138587 (-) 1011 WP_305496067.1 tetraacyldisaccharide 4'-kinase -
  PSH78_RS18775 (PSH78_18775) - 4138587..4139015 (-) 429 WP_305496068.1 biopolymer transporter ExbD -
  PSH78_RS18780 (PSH78_18780) exbB 4139012..4139647 (-) 636 WP_305496069.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH78_RS18785 (PSH78_18785) comA 4139743..4141989 (-) 2247 WP_305496070.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH78_RS18790 (PSH78_18790) - 4142134..4142664 (+) 531 WP_305496071.1 DUF2062 domain-containing protein -
  PSH78_RS18795 (PSH78_18795) - 4142828..4143607 (-) 780 WP_181289921.1 ABC transporter permease -
  PSH78_RS18800 (PSH78_18800) - 4143610..4144542 (-) 933 WP_305496072.1 ABC transporter ATP-binding protein -
  PSH78_RS18805 (PSH78_18805) - 4144677..4145300 (-) 624 WP_305496073.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 81173.27 Da        Isoelectric Point: 9.7404

>NTDB_id=785489 PSH78_RS18785 WP_305496070.1 4139743..4141989(-) (comA) [Pseudomonas sp. FP198]
MRTAMVALALGLVAPVFLPVLPSPWVIAAMATLALMVLPFRLYPAGCFLFGLVWASLAAHHALDGRLPSALDGETRWVEG
RVVGLPQNGDGTVRFELADIQSRRTRLPTSMRLAWYGGPPVSSGERWRLAVKLKRPAGLLNPHGFDYEAWLLSRGIGATG
SVKHGRLLQPAEGAWRDGVRQALAKVDAQGRSGALMALVLGDGSGLSREDWQVLQDTGTIHLLVISGQHIGLFAGLVYLL
VAGAARHGVWPARLPWLPWACVLAFTAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRQADPWTAWLLALLAVLLLNPL
ASLRPGFWLSFAAVAILLFTFGGRLGPWRWWQTWTRAQWLIALGLCPLLLILGLPVSLSGPLVNLLAVPWVSLLVLPSAL
LGTALLPIPFIGESLLWIAGGLLDLLFKALALAAGQVPAWVPPAVPLWALCMAALGTALLLLPKGVPLRILGWPMLMLMV
FPPREEVPHGQAEIWQLDVGQGLAILVRTQRHVLLYDAGPRFGDADAGERVVVPTLHRLGVRTLDMLLLSHADADHAGGA
QAVRNGLPTRRVVSGDPEALPVDLQAGACDSGERWEWDGVRFELWRWTSAVESNQKSCVLLVEAGGERLLLTGDIDTHAE
RALLDSPLAMPTQWLAAPHHGSRSSSSMALLARLEPHSVLISRGRNNAFGHPHPWVMERYRRLGMAIYDSAEQGAIRLQL
GAFTPALGQAGIRRYWRDPPPAGPASEH

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=785489 PSH78_RS18785 WP_305496070.1 4139743..4141989(-) (comA) [Pseudomonas sp. FP198]
ATGCGCACGGCAATGGTCGCGCTTGCACTGGGGCTGGTGGCCCCGGTTTTTCTACCGGTACTGCCGTCGCCATGGGTGAT
CGCAGCCATGGCGACGCTGGCGTTGATGGTACTGCCGTTTCGCCTGTACCCGGCGGGTTGCTTTCTCTTCGGGCTGGTCT
GGGCGAGCCTCGCCGCACATCATGCATTGGACGGACGGTTGCCCTCCGCACTGGACGGCGAGACGCGCTGGGTCGAAGGG
CGGGTCGTCGGTTTGCCGCAAAACGGCGATGGTACGGTGCGTTTCGAATTGGCCGATATCCAGTCAAGGCGCACGCGCTT
GCCAACCTCGATGCGCCTGGCCTGGTATGGCGGGCCGCCGGTCAGTAGCGGTGAAAGATGGCGCCTGGCGGTAAAGCTCA
AGCGCCCCGCGGGGCTGCTCAATCCCCATGGCTTCGACTATGAGGCGTGGCTGTTGAGCCGCGGCATTGGCGCGACCGGC
AGCGTCAAGCACGGGCGACTCCTGCAACCGGCCGAGGGCGCCTGGCGCGACGGGGTGCGCCAGGCACTGGCGAAAGTCGA
TGCCCAAGGGCGTTCCGGGGCGCTGATGGCATTGGTCCTTGGCGATGGCTCCGGGTTGAGTCGCGAAGATTGGCAGGTGC
TGCAAGACACCGGCACGATCCATCTGCTGGTCATTTCCGGGCAGCACATCGGCCTGTTCGCCGGCCTCGTATACCTGCTG
GTCGCCGGCGCGGCGCGTCATGGTGTCTGGCCGGCGCGGTTGCCATGGCTGCCCTGGGCCTGCGTGCTGGCGTTCACCGC
GGCGCTGGGTTACGGCCTGCTCGCCGGTTTCGAAGTGCCGGTGCGGCGGGCCTGTGTGATGATCGGGCTGGTGCTGCTGT
GGCGCTTGCGCTTTCGCCAGGCCGATCCTTGGACGGCCTGGCTGCTGGCGCTCCTGGCAGTGCTGCTGCTCAATCCGCTG
GCGAGCCTGCGGCCGGGGTTCTGGTTGTCGTTCGCCGCGGTGGCCATTCTGCTGTTTACCTTCGGCGGTCGCCTGGGCCC
CTGGCGCTGGTGGCAGACCTGGACCCGCGCCCAGTGGCTGATTGCTCTCGGGCTGTGCCCGCTACTCTTGATCCTCGGGC
TGCCGGTCAGCCTCAGCGGTCCGTTGGTCAACCTGCTGGCGGTGCCCTGGGTCAGTCTGCTGGTGTTGCCTTCGGCCTTG
CTTGGCACCGCGTTGCTACCGATACCTTTCATCGGCGAGAGCCTTCTCTGGATTGCCGGCGGCTTGCTCGATCTGCTGTT
CAAGGCGCTCGCGCTGGCAGCCGGGCAGGTGCCAGCCTGGGTGCCTCCCGCGGTGCCGCTGTGGGCCTTGTGCATGGCGG
CGCTCGGCACTGCGCTGCTGTTGCTGCCCAAGGGCGTACCGCTGCGGATCCTCGGCTGGCCGATGCTGATGCTGATGGTT
TTTCCCCCACGGGAAGAAGTACCCCACGGGCAAGCCGAAATCTGGCAACTGGACGTCGGCCAGGGGCTGGCGATCCTCGT
GCGTACCCAGCGGCACGTCTTGCTTTATGACGCGGGGCCGCGGTTTGGCGACGCCGATGCGGGCGAGCGCGTGGTGGTGC
CGACCTTGCACAGGCTCGGTGTGCGTACCTTGGACATGCTGCTGCTCAGTCACGCCGATGCCGATCACGCCGGCGGTGCA
CAAGCCGTACGCAACGGATTGCCGACCCGTCGGGTGGTCAGCGGCGATCCCGAGGCGCTGCCCGTCGATCTGCAGGCAGG
GGCGTGCGATAGCGGCGAACGCTGGGAATGGGACGGGGTCAGGTTCGAACTGTGGCGCTGGACATCGGCTGTCGAGAGCA
ACCAGAAATCCTGTGTCTTGCTGGTCGAGGCCGGTGGCGAGCGGTTGCTGCTGACCGGCGATATCGATACCCATGCCGAA
CGGGCCTTGCTCGACAGTCCCCTGGCGATGCCGACCCAGTGGCTGGCAGCGCCGCACCATGGCAGCCGCAGCTCATCGTC
GATGGCGCTGCTGGCGCGCCTCGAGCCCCATTCGGTATTGATTTCCCGAGGACGTAACAATGCGTTCGGCCATCCCCATC
CGTGGGTGATGGAGCGTTATCGACGCTTGGGCATGGCGATCTACGACAGTGCTGAACAAGGTGCCATTCGTCTGCAACTC
GGCGCCTTTACACCTGCGCTTGGCCAGGCGGGCATCCGCCGTTACTGGCGCGATCCGCCGCCCGCGGGGCCAGCGTCGGA
GCATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-673)

Domain of unknown function (DUF4131) (DUF4131)

(21-165)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.972

95.187

0.571