Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH78_RS18780 Genome accession   NZ_CP117452
Coordinates   4139012..4139647 (-) Length   211 a.a.
NCBI ID   WP_305496069.1    Uniprot ID   -
Organism   Pseudomonas sp. FP198     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4134012..4144647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH78_RS18745 (PSH78_18745) - 4134389..4134859 (-) 471 WP_305501323.1 (2Fe-2S)-binding protein -
  PSH78_RS18750 (PSH78_18750) murB 4135128..4136147 (-) 1020 WP_305496064.1 UDP-N-acetylmuramate dehydrogenase -
  PSH78_RS18755 (PSH78_18755) - 4136144..4136608 (-) 465 WP_305496065.1 low molecular weight protein-tyrosine-phosphatase -
  PSH78_RS18760 (PSH78_18760) kdsB 4136608..4137372 (-) 765 WP_305496066.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH78_RS18765 (PSH78_18765) - 4137369..4137554 (-) 186 WP_003179363.1 Trm112 family protein -
  PSH78_RS18770 (PSH78_18770) lpxK 4137577..4138587 (-) 1011 WP_305496067.1 tetraacyldisaccharide 4'-kinase -
  PSH78_RS18775 (PSH78_18775) - 4138587..4139015 (-) 429 WP_305496068.1 biopolymer transporter ExbD -
  PSH78_RS18780 (PSH78_18780) exbB 4139012..4139647 (-) 636 WP_305496069.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH78_RS18785 (PSH78_18785) comA 4139743..4141989 (-) 2247 WP_305496070.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH78_RS18790 (PSH78_18790) - 4142134..4142664 (+) 531 WP_305496071.1 DUF2062 domain-containing protein -
  PSH78_RS18795 (PSH78_18795) - 4142828..4143607 (-) 780 WP_181289921.1 ABC transporter permease -
  PSH78_RS18800 (PSH78_18800) - 4143610..4144542 (-) 933 WP_305496072.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22796.92 Da        Isoelectric Point: 8.0840

>NTDB_id=785488 PSH78_RS18780 WP_305496069.1 4139012..4139647(-) (exbB) [Pseudomonas sp. FP198]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYINALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785488 PSH78_RS18780 WP_305496069.1 4139012..4139647(-) (exbB) [Pseudomonas sp. FP198]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGCTGCGAGCCAGCTCGCCGCTGGGGGAGATCCTCGCGGCAGGCCTGGCGAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCGCGCGGGTCATCCATGACCTGGAGCGCTATAT
CAATGCCCTCGGAACCATCGCGGCCATGTCTCCATTGCTGGGCCTGCTGGGTACGGTTCTCGGCATGATCGACATTTTCA
GCGCCTTCACCGGTTCCGGCATGACAACCAACGCCGCCGTGCTGGCGGGCGGTATTTCCAAGGCATTGATCACTACCGCC
GCGGGCCTGATGGTGGGCATCCCGGCCGTGTTCTTCCATCGCTTCCTGCAGCGCCGCGTCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGCGACCGTGACGTGGACCTGGCCGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.667

99.526

0.863