Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH92_RS19820 Genome accession   NZ_CP117451
Coordinates   4569303..4569938 (-) Length   211 a.a.
NCBI ID   WP_025214875.1    Uniprot ID   -
Organism   Pseudomonas beijingensis strain FP2034     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4564303..4574938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH92_RS19785 (PSH92_19780) - 4564682..4565152 (-) 471 WP_122565898.1 (2Fe-2S)-binding protein -
  PSH92_RS19790 (PSH92_19785) murB 4565418..4566437 (-) 1020 WP_122565899.1 UDP-N-acetylmuramate dehydrogenase -
  PSH92_RS19795 (PSH92_19790) - 4566434..4566898 (-) 465 WP_122565900.1 low molecular weight protein-tyrosine-phosphatase -
  PSH92_RS19800 (PSH92_19795) kdsB 4566898..4567662 (-) 765 WP_122565901.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH92_RS19805 (PSH92_19800) - 4567659..4567844 (-) 186 WP_003179363.1 Trm112 family protein -
  PSH92_RS19810 (PSH92_19805) lpxK 4567868..4568878 (-) 1011 WP_122565902.1 tetraacyldisaccharide 4'-kinase -
  PSH92_RS19815 (PSH92_19810) - 4568878..4569306 (-) 429 WP_053123850.1 biopolymer transporter ExbD -
  PSH92_RS19820 (PSH92_19815) exbB 4569303..4569938 (-) 636 WP_025214875.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH92_RS19825 (PSH92_19820) comA 4570034..4572280 (-) 2247 WP_305467887.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH92_RS19830 (PSH92_19825) - 4572425..4572940 (+) 516 WP_122565904.1 DUF2062 domain-containing protein -
  PSH92_RS19835 (PSH92_19830) - 4573119..4573898 (-) 780 WP_041476072.1 ABC transporter permease -
  PSH92_RS19840 (PSH92_19835) - 4573901..4574833 (-) 933 WP_122565905.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22799.88 Da        Isoelectric Point: 7.3613

>NTDB_id=785446 PSH92_RS19820 WP_025214875.1 4569303..4569938(-) (exbB) [Pseudomonas beijingensis strain FP2034]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYISTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785446 PSH92_RS19820 WP_025214875.1 4569303..4569938(-) (exbB) [Pseudomonas beijingensis strain FP2034]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGTGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGCTGCGGGCCAGCTCGCCGCTCGGGGAGGTCCTCGCCGCTGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAACGCTACAT
CAGTACCCTGGGCACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTGGGAACGGTGCTGGGCATGATCGACATCTTCA
GCGCGTTTACCGGCTCCGGCATGACCACGAATGCCGCGGTACTGGCGGGCGGGATTTCCAAGGCCCTGATCACCACCGCC
GCCGGCCTGATGGTCGGTATCCCTGCCGTGTTCTTCCATCGGTTCCTGCAACGCCGCGTCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGTGATCGTGACGTGGACCTGGCTGGGGGCAAGCAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844