Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PSH57_RS24570 Genome accession   NZ_CP117449
Coordinates   5449043..5450389 (+) Length   448 a.a.
NCBI ID   WP_305385945.1    Uniprot ID   -
Organism   Pseudomonas hefeiensis strain FP205     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5444043..5455389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH57_RS24545 (PSH57_24545) pgeF 5444254..5444979 (-) 726 WP_305385943.1 peptidoglycan editing factor PgeF -
  PSH57_RS24550 (PSH57_24550) rluD 5444976..5445938 (-) 963 WP_305416171.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH57_RS24555 (PSH57_24555) - 5446090..5447106 (+) 1017 WP_047229874.1 outer membrane protein assembly factor BamD -
  PSH57_RS24560 (PSH57_24560) - 5447231..5447464 (+) 234 WP_256233125.1 PP0621 family protein -
  PSH57_RS24565 (PSH57_24565) pilS 5447454..5449046 (+) 1593 WP_305385944.1 ATP-binding protein Regulator
  PSH57_RS24570 (PSH57_24570) pilR 5449043..5450389 (+) 1347 WP_305385945.1 sigma-54 dependent transcriptional regulator Regulator
  PSH57_RS24575 (PSH57_24575) - 5450610..5450966 (-) 357 WP_305385946.1 DUF6124 family protein -
  PSH57_RS24580 (PSH57_24580) thiO 5452382..5453482 (-) 1101 WP_305385947.1 glycine oxidase ThiO -
  PSH57_RS24585 (PSH57_24585) - 5453538..5453939 (-) 402 WP_305385948.1 type IV pilin protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50088.52 Da        Isoelectric Point: 6.2012

>NTDB_id=785400 PSH57_RS24570 WP_305385945.1 5449043..5450389(+) (pilR) [Pseudomonas hefeiensis strain FP205]
MTTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAQNLAQAQALLAEETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVAIPAASIERCLLGDSPPMHNVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSGQGFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRVLCATHKDLDAEVSAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
THTLQRLAANTGSPAVKLHPQALDALRNYRFPGNVRELENMLERAYTLCEHQLIEAHDLRLVEGISTTDAGSPDLMRVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=785400 PSH57_RS24570 WP_305385945.1 5449043..5450389(+) (pilR) [Pseudomonas hefeiensis strain FP205]
TTGACTACACGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
ACGGATGAAACTCGACACCCGCAGCGCCCAGAACCTTGCCCAGGCCCAGGCCCTGCTGGCTGAAGAGACCTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAGTTGGTGCAACACATCCAGCAACGCTACCCGCAACTGCCC
GTGGCAATGATCACCGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGACGGCTGCGGGAGCTGGTCACCAGCGCGTTACGCCTACCGCCGGTCGCCATCCCGGCGGCGTCCA
TCGAGCGCTGTCTGCTGGGCGACTCCCCGCCGATGCACAACGTCCGCAAACAGATCGAAAAACTCGCTCGCAGTCAGGCG
CCGGTCTACATCAGCGGGGAATCGGGTTGCGGCAAGGAGCTGGTCGCCCGGTTGATCCATGAGCAAGGCCCGCGTTCCGG
CCAGGGTTTTGTGCCGGTCAACTGTGGGGCGATTCCCAGTGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAACCCGGACTGTTCCAGGCCGCCCACGGCGGGACCTTGTTCCTTGACGAAGTGGCC
GACCTGCCCCTGGCGATGCAAGTCAAATTGCTGCGGGCCATCCAGGAAAAGGCCGTGCGTGCCGTTGGAGGCCAGCAGGA
AGAGGTGGTGGATGTACGCGTTCTTTGCGCTACCCACAAAGATCTGGACGCCGAAGTCAGCGCCGGGCGCTTTCGCCAGG
ATCTGTACTATCGACTCAACGTCATCGAACTGCGTGTCCCGCCCTTGCGTGAACGCCGCGAAGACATCGAACCTCTCGCC
ACTCATACCCTCCAGCGCCTGGCCGCCAACACCGGCAGTCCTGCGGTCAAGCTCCATCCCCAGGCCCTGGACGCCCTTCG
AAACTACCGCTTCCCGGGCAATGTTCGGGAACTGGAAAACATGCTCGAACGCGCTTACACCCTTTGCGAGCACCAGTTGA
TCGAAGCCCACGACCTGCGCCTGGTTGAAGGCATTAGCACTACCGACGCAGGCAGCCCCGATCTGATGCGGGTCGATAAC
CTGGAAGACTATCTGGAGGACGTCGAACGCAAACTCATTCTTCAGGCGTTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCCCAGCGGTTGAAATTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.378

99.107

0.777
  pilR Acinetobacter baumannii strain A118

49.455

100

0.507