Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PSH57_RS24470 | Genome accession | NZ_CP117449 |
| Coordinates | 5433200..5434069 (+) | Length | 289 a.a. |
| NCBI ID | WP_305416169.1 | Uniprot ID | - |
| Organism | Pseudomonas hefeiensis strain FP205 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5428200..5439069
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH57_RS24445 (PSH57_24445) | - | 5428378..5428674 (+) | 297 | WP_305385929.1 | DUF2845 domain-containing protein | - |
| PSH57_RS24450 (PSH57_24450) | - | 5429000..5429353 (-) | 354 | WP_305385930.1 | BON domain-containing protein | - |
| PSH57_RS24455 (PSH57_24455) | pilA | 5429633..5430052 (-) | 420 | WP_305385931.1 | pilin | Machinery gene |
| PSH57_RS24460 (PSH57_24460) | pilB | 5430278..5431978 (+) | 1701 | WP_305385932.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PSH57_RS24465 (PSH57_24465) | pilC | 5431981..5433198 (+) | 1218 | WP_305385933.1 | type II secretion system F family protein | Machinery gene |
| PSH57_RS24470 (PSH57_24470) | pilD | 5433200..5434069 (+) | 870 | WP_305416169.1 | A24 family peptidase | Machinery gene |
| PSH57_RS24475 (PSH57_24475) | coaE | 5434081..5434704 (+) | 624 | WP_305385934.1 | dephospho-CoA kinase | - |
| PSH57_RS24480 (PSH57_24480) | yacG | 5434701..5434901 (+) | 201 | WP_305385935.1 | DNA gyrase inhibitor YacG | - |
| PSH57_RS24485 (PSH57_24485) | - | 5435002..5435217 (-) | 216 | WP_305385936.1 | hypothetical protein | - |
| PSH57_RS24490 (PSH57_24490) | - | 5435281..5435967 (-) | 687 | WP_305385937.1 | energy-coupling factor ABC transporter permease | - |
| PSH57_RS24495 (PSH57_24495) | - | 5436112..5436738 (+) | 627 | WP_305385938.1 | DUF1780 domain-containing protein | - |
| PSH57_RS24500 (PSH57_24500) | - | 5436735..5437262 (+) | 528 | WP_305385939.1 | MOSC domain-containing protein | - |
| PSH57_RS24505 (PSH57_24505) | - | 5437315..5437488 (+) | 174 | WP_214918225.1 | DUF3094 domain-containing protein | - |
| PSH57_RS24510 (PSH57_24510) | - | 5437549..5438847 (+) | 1299 | WP_305385940.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31818.94 Da Isoelectric Point: 8.0493
>NTDB_id=785398 PSH57_RS24470 WP_305416169.1 5433200..5434069(+) (pilD) [Pseudomonas hefeiensis strain FP205]
MPLTEFFALYPLAFVLAALLLGLIIGSFLNVLVWRLPKMLSREWRLQAHDLLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLALRGRCSSCAAPIGRRYPLTELACGILSAFVAWHFGFGWQAAMVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPTSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGS
MPLTEFFALYPLAFVLAALLLGLIIGSFLNVLVWRLPKMLSREWRLQAHDLLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLALRGRCSSCAAPIGRRYPLTELACGILSAFVAWHFGFGWQAAMVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPTSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGS
Nucleotide
Download Length: 870 bp
>NTDB_id=785398 PSH57_RS24470 WP_305416169.1 5433200..5434069(+) (pilD) [Pseudomonas hefeiensis strain FP205]
ATGCCCCTGACTGAGTTTTTCGCGCTTTATCCCCTGGCCTTCGTGCTCGCCGCGTTATTGCTCGGACTGATCATCGGCAG
TTTCCTCAACGTCCTGGTGTGGCGCCTGCCCAAGATGCTCTCGCGCGAATGGCGGCTGCAAGCCCATGACTTGCTGGGCC
TGCCCGCCGAAGCCCCTGGCCCGGTCTACAACCTGATGCTGCCGCATTCCCAGTGCCCGCACTGCGGCCACCGCATCCGG
GCCTGGGAAAATATTCCGCTGCTCAGCTACCTGGCGTTGCGCGGTCGTTGCTCCAGTTGTGCCGCGCCCATCGGCCGGCG
TTATCCCTTGACGGAGCTGGCCTGCGGCATCCTGTCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGCAA
TGGTGATGGTGCTCAGTTGGGGCCTGCTGGGCATGAGCCTGATTGATGCCGAGCACCAATTGTTGCCCGATACCCTGGTG
CTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGTTGTTCGTCTCCTTGAACCAGGCGATGTGGGGCGCCGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAATTGATCACTGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGTTGGCGATGCTGGGCGCCTGGGGCGGCTGGCAGATCCTGCCACTGACGTTGCTGTTGTCATCGCTGGTGGGC
GCCGTTATCGGGGTCATTGTGCTGCGCCTGCGTGATGCACCGACATCGACGCAAATCCCCTTTGGGCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTCCTAA
ATGCCCCTGACTGAGTTTTTCGCGCTTTATCCCCTGGCCTTCGTGCTCGCCGCGTTATTGCTCGGACTGATCATCGGCAG
TTTCCTCAACGTCCTGGTGTGGCGCCTGCCCAAGATGCTCTCGCGCGAATGGCGGCTGCAAGCCCATGACTTGCTGGGCC
TGCCCGCCGAAGCCCCTGGCCCGGTCTACAACCTGATGCTGCCGCATTCCCAGTGCCCGCACTGCGGCCACCGCATCCGG
GCCTGGGAAAATATTCCGCTGCTCAGCTACCTGGCGTTGCGCGGTCGTTGCTCCAGTTGTGCCGCGCCCATCGGCCGGCG
TTATCCCTTGACGGAGCTGGCCTGCGGCATCCTGTCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGCAA
TGGTGATGGTGCTCAGTTGGGGCCTGCTGGGCATGAGCCTGATTGATGCCGAGCACCAATTGTTGCCCGATACCCTGGTG
CTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGTTGTTCGTCTCCTTGAACCAGGCGATGTGGGGCGCCGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAATTGATCACTGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGTTGGCGATGCTGGGCGCCTGGGGCGGCTGGCAGATCCTGCCACTGACGTTGCTGTTGTCATCGCTGGTGGGC
GCCGTTATCGGGGTCATTGTGCTGCGCCTGCGTGATGCACCGACATCGACGCAAATCCCCTTTGGGCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.169 |
98.27 |
0.522 |
| pilD | Vibrio campbellii strain DS40M4 |
50.526 |
98.616 |
0.498 |
| pilD | Acinetobacter nosocomialis M2 |
48.905 |
94.81 |
0.464 |
| pilD | Acinetobacter baumannii D1279779 |
48.905 |
94.81 |
0.464 |
| pilD | Neisseria gonorrhoeae MS11 |
45.993 |
99.308 |
0.457 |