Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH62_RS17155 Genome accession   NZ_CP117442
Coordinates   3905948..3908173 (-) Length   741 a.a.
NCBI ID   WP_305463550.1    Uniprot ID   -
Organism   Pseudomonas tolaasii strain FP2293     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3900948..3913173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH62_RS17120 (PSH62_17115) murB 3901319..3902338 (-) 1020 WP_305463545.1 UDP-N-acetylmuramate dehydrogenase -
  PSH62_RS17125 (PSH62_17120) - 3902335..3902799 (-) 465 WP_016969297.1 low molecular weight protein-tyrosine-phosphatase -
  PSH62_RS17130 (PSH62_17125) kdsB 3902799..3903563 (-) 765 WP_016969296.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH62_RS17135 (PSH62_17130) - 3903560..3903745 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH62_RS17140 (PSH62_17135) lpxK 3903769..3904779 (-) 1011 WP_305463548.1 tetraacyldisaccharide 4'-kinase -
  PSH62_RS17145 (PSH62_17140) - 3904779..3905207 (-) 429 WP_016969294.1 biopolymer transporter ExbD -
  PSH62_RS17150 (PSH62_17145) exbB 3905204..3905839 (-) 636 WP_016969293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH62_RS17155 (PSH62_17150) comA 3905948..3908173 (-) 2226 WP_305463550.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH62_RS17160 (PSH62_17155) - 3908309..3908824 (+) 516 WP_016969291.1 DUF2062 domain-containing protein -
  PSH62_RS17165 (PSH62_17160) - 3908828..3910186 (-) 1359 WP_016969290.1 sensor histidine kinase -
  PSH62_RS17170 (PSH62_17165) - 3910173..3910901 (-) 729 WP_177007109.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80072.70 Da        Isoelectric Point: 10.2729

>NTDB_id=785211 PSH62_RS17155 WP_305463550.1 3905948..3908173(-) (comA) [Pseudomonas tolaasii strain FP2293]
MRTGLFALGLGLLSLRFLPALPPLGWLLAMPVLALMLLPFRTHPLAFFLLGLSWACASAQSALEERLNPALEGQTRWVEG
RVVGLPQQTGTGVRFELADSRSRNAVLPKRIRVSWHAGPPVQSGERWRLALTFKRPLGLLNFHGFDYEAWLLAQRIGATA
SVKDGERLASARNAWRDPIRQRLMAVDAQGREAALVALVLGDGSGLGTDEWQILQDTGTVHLLVISGQHIGLLAGLIYGV
VAGLARYGCWPRTLPWLPWACGLAFAAALSYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWLPWLLALNGVLLLEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGPWSIWQVWTRPQWLIAIGLFPVLLVLGLPVSLSAPLANLFAVPWISLVVLPLAL
MGTALLAVPWLGEGLLWLAGGALDGLFALLALLAERSPAWVPAEVPLGYWWVSLAGAVLLLLPKGVPFRLLGWPMLLLSV
FPPREQVPHGQAEVVQLDVGQGQAVIVRTRHHTVLYDTGPRSGAIDLGARVVLPSLRKLGAGALDLMVLSHAHADHAGGA
AAVARGLPVKRVIGGETEGLPAFLDTQTCSSGERWVWDGVTFELWQWPGATSSNPRSCVLRIEANGEGLLLTGDIDRAAE
QAFLASPLAIRTDWLQAPHHGSRSSSSDAFLQQLAPDSVLISRGRGNAFGHPHPQVLARYQALGSQIHDSAEQGAVRVLL
GAFKPPTTARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=785211 PSH62_RS17155 WP_305463550.1 3905948..3908173(-) (comA) [Pseudomonas tolaasii strain FP2293]
ATGAGAACAGGGTTGTTCGCGCTCGGACTTGGCTTGCTTTCGCTGCGATTCTTGCCCGCACTGCCGCCATTGGGCTGGCT
GCTGGCCATGCCGGTGCTGGCATTGATGCTGTTGCCTTTTCGCACCCATCCGCTGGCGTTTTTCCTGCTGGGTTTGAGCT
GGGCGTGTGCCAGTGCGCAATCGGCGCTGGAGGAGCGGCTCAACCCGGCACTGGAGGGGCAGACACGCTGGGTGGAAGGG
CGCGTGGTCGGGTTACCGCAGCAAACGGGGACGGGCGTGCGCTTTGAATTGGCGGACAGCCGGTCTCGCAACGCTGTTTT
ACCCAAGCGTATCCGGGTGTCCTGGCATGCAGGCCCGCCCGTGCAAAGCGGCGAGCGCTGGCGCCTGGCGCTGACGTTTA
AGCGGCCGCTGGGGTTGCTCAATTTTCATGGCTTTGACTATGAGGCGTGGTTGCTGGCCCAGCGCATCGGTGCAACGGCT
TCGGTGAAAGATGGCGAGCGACTGGCAAGCGCCCGAAATGCCTGGCGCGACCCGATTCGTCAGCGCTTGATGGCCGTGGA
TGCGCAAGGGCGTGAAGCCGCACTGGTGGCCTTGGTACTGGGGGACGGCTCCGGGCTGGGAACCGACGAGTGGCAAATTC
TGCAAGACACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCATATCGGGCTGCTGGCGGGGCTGATCTACGGGGTG
GTCGCAGGGCTTGCACGGTATGGCTGTTGGCCTCGCACGTTGCCCTGGCTGCCGTGGGCGTGTGGGCTCGCGTTTGCTGC
AGCATTGAGCTATGGCCTGTTGGCAGGGTTTGGCGTGCCGGTGCAGCGGGCGTGTGTGATGGTCGGGCTGGTGTTGCTCT
GGCGCCTGCGTTTTCGGCACCTGGGCGTCTGGCTGCCGTGGTTGCTGGCGCTCAACGGGGTATTGCTGCTTGAGCCATTG
GCCAGCTTGCAGCCGGGGTTCTGGTTGTCGTTCGCGGCGGTCGCGGTGCTGGTACTGGCTTTCGGCGGGCGGCTGGGGCC
GTGGAGCATCTGGCAGGTCTGGACCCGGCCACAGTGGCTGATCGCGATCGGTCTATTCCCGGTCCTGCTGGTGTTGGGGC
TGCCCGTCAGTCTCAGCGCGCCGCTGGCCAATTTGTTTGCCGTGCCGTGGATCAGCCTGGTGGTGTTGCCTCTGGCGTTG
ATGGGTACCGCTCTGCTGGCTGTGCCGTGGCTGGGTGAAGGCTTGCTGTGGTTGGCCGGCGGGGCGCTGGATGGGCTGTT
CGCGCTGCTGGCGCTCTTGGCCGAGCGCTCGCCGGCCTGGGTTCCGGCCGAGGTGCCCTTGGGGTACTGGTGGGTAAGTC
TGGCAGGCGCGGTGTTGTTGCTGCTGCCCAAGGGCGTGCCGTTTCGATTGCTGGGCTGGCCGATGCTGTTGCTGTCTGTT
TTTCCACCCCGAGAGCAGGTGCCCCATGGGCAGGCCGAGGTGGTGCAGCTGGATGTCGGTCAGGGGCAGGCCGTGATTGT
GCGCACCCGCCACCACACCGTGCTGTACGACACGGGGCCGCGCTCGGGGGCGATTGACCTGGGCGCGCGCGTGGTACTGC
CATCGTTGAGAAAACTCGGGGCAGGGGCGCTGGACCTGATGGTACTCAGCCATGCCCACGCCGATCACGCTGGAGGAGCG
GCGGCAGTCGCCCGCGGGCTGCCGGTCAAGCGGGTCATCGGTGGTGAAACCGAGGGTTTGCCGGCGTTTCTCGACACTCA
AACCTGCTCCAGTGGCGAGCGGTGGGTGTGGGACGGGGTGACATTTGAGTTGTGGCAGTGGCCTGGGGCTACTAGCAGCA
ACCCGAGGTCTTGTGTGTTGCGCATCGAGGCCAATGGCGAAGGCCTGCTGCTGACGGGTGATATCGATCGCGCTGCCGAA
CAGGCGTTTCTGGCTTCACCGCTGGCCATTCGCACCGATTGGCTGCAAGCGCCTCATCATGGCAGTCGCAGTTCTTCATC
CGACGCTTTCCTGCAACAGCTTGCCCCCGACTCGGTGTTGATTTCACGGGGGCGCGGCAATGCGTTCGGCCATCCCCATC
CGCAAGTGTTGGCGCGCTATCAGGCACTGGGCAGCCAAATTCATGACAGCGCCGAGCAGGGCGCCGTGCGTGTACTACTG
GGGGCGTTCAAACCACCGACTACTGCGCGCAGTCAACGTCGTTTCTGGCGCGAAGCGTTACCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.501

97.031

0.587
  comA Ralstonia pseudosolanacearum GMI1000

37.089

100

0.395