Detailed information NTG0785193

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH73_RS22230
• Genome accession: NZ_CP117441
• Coordinates: 4957246..4958118 (+)
• Length: 290 a.a.
• NCBI ID: WP_198817572.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP2294
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4952246..4963118

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH73_RS22200 (PSH73_22195)	nadC	4952448..4953296 (+)	849	WP_057958406.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PSH73_RS22205 (PSH73_22200)	-	4953363..4953668 (-)	306	WP_057444407.1	DUF6388 family protein	-
PSH73_RS22215 (PSH73_22210)	-	4953919..4955325 (-)	1407	WP_198799651.1	O-antigen ligase	-
PSH73_RS22220 (PSH73_22215)	-	4955404..4955814 (-)	411	WP_057958404.1	pilin	-
PSH73_RS22225 (PSH73_22220)	pilC	4956017..4957243 (+)	1227	WP_057958403.1	type II secretion system F family protein	Machinery gene
PSH73_RS22230 (PSH73_22225)	pilD	4957246..4958118 (+)	873	WP_198817572.1	A24 family peptidase	Machinery gene
PSH73_RS22235 (PSH73_22230)	coaE	4958115..4958738 (+)	624	WP_198817574.1	dephospho-CoA kinase	-
PSH73_RS22240 (PSH73_22235)	yacG	4958735..4958938 (+)	204	WP_032861907.1	DNA gyrase inhibitor YacG	-
PSH73_RS22245 (PSH73_22240)	-	4958935..4959150 (-)	216	WP_057441062.1	hypothetical protein	-
PSH73_RS22250 (PSH73_22245)	-	4959214..4959903 (-)	690	WP_057441064.1	energy-coupling factor ABC transporter permease	-
PSH73_RS22255 (PSH73_22250)	-	4959900..4960367 (-)	468	WP_120734168.1	FAD/FMN-containing dehydrogenase	-
PSH73_RS22260 (PSH73_22255)	-	4960470..4961099 (+)	630	WP_057441069.1	DUF1780 domain-containing protein	-
PSH73_RS22265 (PSH73_22260)	-	4961139..4961312 (+)	174	WP_057441071.1	DUF3094 family protein	-
PSH73_RS22270 (PSH73_22265)	-	4961373..4962671 (+)	1299	WP_057441073.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32080.17 Da
• Isoelectric Point: 7.3428

>NTDB_id=785193 PSH73_RS22230 WP_198817572.1 4957246..4958118(+) (pilD) [Pseudomonas sp. FP2294]
MTLDLLLILHPWLFVWASLVLGLIVGSFLNVLVWRLPKMLERDWRAQAHEILGLPPEPGGPTYNLLHPNSCCPHCSQPIR
PWQNIPVLSYLLLRGRCAQCHGSISPRYPLTELACGLLSAFIAWHYGFGWPAAGVLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLILNYFELYTTLPDALLGAVAGYLSLWSVFWLFKLCTGKDGMGYGDFKLLALLGAWGGWQILPLTLLLASLVG
AIAGVIVLRIRNAQTSVPLPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=785193 PSH73_RS22230 WP_198817572.1 4957246..4958118(+) (pilD) [Pseudomonas sp. FP2294]
ATGACCCTGGACCTCCTCCTGATCCTCCATCCCTGGCTGTTCGTCTGGGCTTCACTGGTGCTGGGGCTGATCGTCGGCAG
CTTCCTCAACGTGCTGGTCTGGCGCCTGCCAAAAATGCTCGAGCGCGACTGGCGCGCCCAGGCCCATGAAATACTCGGCC
TGCCCCCGGAACCCGGCGGCCCGACCTATAACCTGTTGCACCCCAACTCCTGCTGCCCGCACTGCTCACAGCCGATTCGC
CCGTGGCAAAACATCCCGGTGCTCAGCTACTTGCTGCTGCGGGGGCGCTGCGCGCAGTGCCACGGTTCCATCAGCCCACG
CTACCCGCTGACCGAACTGGCGTGCGGGCTGCTTTCGGCATTTATTGCCTGGCATTACGGCTTCGGCTGGCCAGCCGCTG
GCGTGCTGTTCTTGAGCTGGGGCTTGCTGGCCATGAGCCTGATCGACGCCGATCACCAACTGCTGCCGGATGTGCTGGTG
CTGCCACTGCTGTGGCTGGGGTTGATCCTCAATTATTTCGAGTTGTACACGACCTTGCCCGATGCCCTGCTGGGCGCGGT
TGCCGGTTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGTTGTGCACCGGCAAGGACGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCCCTGCTCGGTGCCTGGGGCGGTTGGCAGATCCTGCCGCTGACGCTGTTGCTGGCATCGCTGGTGGGT
GCGATCGCAGGGGTGATTGTCTTGCGCATACGCAACGCGCAGACGTCAGTGCCCTTGCCTTTTGGTCCCTATCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.035	98.276	0.531
pilD	Vibrio campbellii strain DS40M4	51.429	96.552	0.497
pilD	Acinetobacter baumannii D1279779	50.181	95.517	0.479
pilD	Acinetobacter nosocomialis M2	49.458	95.517	0.472
pilD	Neisseria gonorrhoeae MS11	52.174	87.241	0.455