Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH73_RS18920 Genome accession   NZ_CP117441
Coordinates   4244443..4246698 (-) Length   751 a.a.
NCBI ID   WP_282405821.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2294     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4239443..4251698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH73_RS18885 (PSH73_18880) murB 4239846..4240865 (-) 1020 WP_200659463.1 UDP-N-acetylmuramate dehydrogenase -
  PSH73_RS18890 (PSH73_18885) - 4240862..4241326 (-) 465 WP_057439613.1 low molecular weight protein-tyrosine-phosphatase -
  PSH73_RS18895 (PSH73_18890) kdsB 4241326..4242090 (-) 765 WP_057960406.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH73_RS18900 (PSH73_18895) - 4242087..4242272 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH73_RS18905 (PSH73_18900) lpxK 4242297..4243307 (-) 1011 WP_169990641.1 tetraacyldisaccharide 4'-kinase -
  PSH73_RS18910 (PSH73_18905) - 4243307..4243735 (-) 429 WP_029299722.1 biopolymer transporter ExbD -
  PSH73_RS18915 (PSH73_18910) exbB 4243732..4244367 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH73_RS18920 (PSH73_18915) comA 4244443..4246698 (-) 2256 WP_282405821.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH73_RS18925 (PSH73_18920) - 4246835..4247350 (+) 516 WP_057960409.1 DUF2062 domain-containing protein -
  PSH73_RS18930 (PSH73_18925) - 4247570..4250323 (+) 2754 WP_057960410.1 response regulator -
  PSH73_RS18935 (PSH73_18930) - 4250435..4251424 (+) 990 WP_057960411.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 82088.45 Da        Isoelectric Point: 10.9865

>NTDB_id=785188 PSH73_RS18920 WP_282405821.1 4244443..4246698(-) (comA) [Pseudomonas sp. FP2294]
MRTGMFALALGLLALRLLPVLPPVGWLLVLPVVALMLLPFRTYPLAFFLLGLAWVCFSAQRALDDRLVPALDGQTRWLEG
RVSGLPQQSGGVVRFELSDSRSRQDRLPQRIRVSWQGGPPVRSGERWRLAVTLKRPSGLLNFQGFDQEAWLLAQRVGATG
SVKDGQRLAPARHAWRDGVRQQLLAVDARGREAGLAALVLGDGSGLAAEDWRILQDTGTVHLLVISGQHIGLLSGLIYAW
VAGLARYGCWPRRLPWLPWACGLAFAAALAYGLLAGFAVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALNAVLLLEPL
ASLQPGFWLSFAAVAVLLLAFSGRLGPWRAWWAWTRAQWLIAIGLFPLLLILGLPISLSAPLANLFAVPWISLLVLPLAL
AGTLLLTVPWLGSGLLWLAGGALDWLFKALAWLAGHVPAWMPAEVPVGYWLLSLLGAVLLLMPKGIPFRLLGWPLLLLAV
FPPRESIPLGQVAVEQLDVGQGLSIVLRTRNHVLLYDAGPRVGDFDLGERVVLPALRKLGVGQVDLMLLSHADADHAGGA
AAVARGLPVRRVVGGETQGLPAFLDTQACVSGEQWEWDGVVFQLWQWADARNGNAKSCVLQVQANGERLLLTGDIDREAE
RALLATPLAVATDWLQVPHHGSRSSSSWPFVQQLAPKAVLISRGRGNGFGHPHPQVVARYQHLRSTLYDSAEQGAVRLRL
GAFEAPVMARSQRRFWRAPVIDSYQRPVPAT

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=785188 PSH73_RS18920 WP_282405821.1 4244443..4246698(-) (comA) [Pseudomonas sp. FP2294]
ATGCGTACAGGGATGTTTGCGCTGGCGTTAGGGCTGCTGGCGTTGCGCCTGCTGCCCGTCTTGCCGCCGGTCGGTTGGTT
GCTGGTGTTGCCGGTGGTGGCGTTGATGCTACTGCCGTTTCGTACTTATCCGCTGGCGTTTTTCCTGTTGGGCCTGGCGT
GGGTCTGTTTCAGCGCGCAACGGGCGCTCGACGACCGGCTCGTACCCGCGCTGGACGGCCAGACCCGCTGGCTGGAAGGG
CGCGTCAGCGGGCTGCCGCAGCAGAGTGGTGGGGTGGTGCGCTTCGAACTGAGCGACAGCCGGTCACGCCAGGACCGGCT
ACCCCAGCGCATCCGTGTGAGCTGGCAGGGCGGCCCGCCCGTGCGCAGTGGTGAGCGCTGGCGTTTGGCCGTGACCCTCA
AGCGACCCTCCGGCCTGTTGAATTTCCAGGGCTTCGATCAAGAGGCCTGGCTGTTGGCCCAGCGTGTGGGGGCGACGGGG
TCGGTCAAGGATGGCCAGCGCCTGGCGCCGGCCCGACATGCCTGGCGCGATGGGGTCCGCCAGCAGCTATTGGCGGTAGA
CGCCCGGGGGCGTGAAGCCGGGCTGGCCGCACTGGTGCTGGGCGATGGCTCCGGCTTGGCCGCCGAGGATTGGCGCATTT
TGCAGGACACCGGCACCGTGCATCTATTGGTCATTTCCGGCCAGCATATCGGCCTGTTGTCGGGGTTGATCTATGCCTGG
GTGGCCGGGCTGGCCCGCTACGGCTGCTGGCCCAGGCGTTTGCCCTGGCTGCCTTGGGCCTGCGGCCTGGCATTTGCCGC
AGCGCTGGCCTATGGCTTGCTCGCCGGCTTTGCCGTGCCAGTGCAGCGGGCCTGTGTGATGGTGGGGCTGGTGTTGCTGT
GGCGCCTGCGGTTTCGCCACCTGGGGATCTGGTGGCCACTGCTGCTGGCCCTGAATGCGGTGCTGCTCCTCGAACCCCTG
GCCAGCCTGCAACCGGGTTTCTGGCTGTCATTTGCCGCCGTGGCCGTGTTGCTGCTGGCCTTTAGCGGCCGCCTGGGGCC
CTGGCGGGCGTGGTGGGCCTGGACCCGTGCCCAATGGCTGATCGCGATAGGGCTGTTTCCGCTGCTACTGATCCTCGGTT
TGCCGATCAGCTTGAGTGCGCCGCTGGCCAATCTGTTTGCGGTGCCGTGGATCAGCCTGTTGGTGTTGCCGCTGGCGCTG
GCGGGCACGCTGTTGCTGACGGTGCCATGGCTGGGCAGTGGCCTGTTGTGGCTGGCGGGGGGCGCGCTGGATTGGCTGTT
CAAGGCCCTGGCCTGGCTGGCCGGGCACGTGCCCGCCTGGATGCCGGCCGAGGTGCCTGTGGGCTACTGGTTGCTCAGTC
TGCTGGGCGCGGTGCTGTTATTGATGCCCAAGGGCATTCCCTTTCGCCTGCTGGGTTGGCCCCTGTTGCTGCTGGCGGTG
TTCCCGCCCCGTGAGTCGATCCCGTTGGGCCAGGTGGCGGTGGAGCAACTGGATGTCGGCCAGGGCTTGTCGATCGTGTT
GCGCACCCGCAACCACGTGCTGTTGTATGACGCCGGGCCACGGGTGGGGGATTTCGATCTTGGCGAGCGCGTGGTATTGC
CGGCGCTGCGCAAGCTGGGGGTTGGCCAGGTGGACTTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGTGGCGCG
GCGGCGGTGGCCCGTGGGTTACCCGTCCGGCGCGTGGTGGGCGGGGAAACCCAGGGGTTGCCGGCGTTCCTCGACACCCA
GGCCTGCGTCAGCGGTGAGCAGTGGGAGTGGGACGGCGTGGTGTTCCAGCTGTGGCAATGGGCAGATGCCCGCAACGGTA
ACGCGAAGTCGTGCGTGCTGCAGGTCCAGGCCAATGGCGAGCGGTTGCTGCTGACCGGCGATATCGACCGCGAGGCCGAG
CGGGCCTTGCTGGCCACGCCGCTGGCGGTCGCCACGGATTGGCTGCAAGTGCCCCATCATGGCAGTCGCAGTTCCTCGTC
CTGGCCGTTTGTCCAGCAACTGGCACCCAAGGCGGTGCTGATCTCCCGTGGGCGAGGCAATGGTTTCGGTCATCCGCACC
CGCAAGTGGTGGCGCGTTACCAGCATTTGCGCAGCACCCTTTATGACAGCGCCGAACAGGGCGCGGTGCGTCTGCGCCTG
GGGGCTTTCGAGGCGCCGGTCATGGCACGCAGCCAGCGCCGTTTCTGGCGCGCGCCTGTCATCGACAGTTACCAAAGGCC
GGTGCCTGCGACATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-665)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.724

95.606

0.581
  comA Ralstonia pseudosolanacearum GMI1000

35.733

100

0.37