Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH86_RS21980 Genome accession   NZ_CP117440
Coordinates   4989086..4991332 (-) Length   748 a.a.
NCBI ID   WP_305484895.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2300     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 4992091..4993313 4989086..4991332 flank 759


Gene organization within MGE regions


Location: 4989086..4993313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH86_RS21980 (PSH86_21975) comA 4989086..4991332 (-) 2247 WP_305484895.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH86_RS21985 (PSH86_21980) - 4991477..4991992 (+) 516 WP_046063671.1 DUF2062 domain-containing protein -
  PSH86_RS21990 (PSH86_21985) - 4992091..4993313 (+) 1223 WP_122568800.1 IS3 family transposase -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 81098.21 Da        Isoelectric Point: 10.0412

>NTDB_id=785161 PSH86_RS21980 WP_305484895.1 4989086..4991332(-) (comA) [Pseudomonas sp. FP2300]
MRTGLVALALGLLAPIFLPALPPLWLIAAMPVVALMALPFRTYPLGFFLFGLAWACLSAQFALDDRLSVALDGETRWVEG
RVVGLPQQGDGVVRFELADARSRRTRLPTTLRLAWFGGPPVNSGERWRLAVKLKRPAGLLNPHGFDYSAWLLSRGIGATG
TIKDGRLLQAARGAWRDEVRQALAQVDAHGRSGALAALVLGDGGGLTREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPAGLAWLPWACALAFCAALGYGLLAGFEVPVRRACTMIGLVLLWRLRFKQPDPWWAWLLAFAGVLVFDPL
ANLRPGFWLSFAAVAILMFTFGGRLGSWRWWQTWTRAQWLVAVGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPSAL
LGTALLPVPLIGEGLLWIAGGLLDLLFKGLTLVAGRMPAWVPAAVPNWALGIAVLGAFLLLLPKGVPLRVLGWPMVLLMV
FPPREHLPPGQAEIWQLDVGQGLAVLVRTRRHTLLYDAGPRFGEADVGERVVLPTLRKLGVRGLDLMLLSHADADHAGGA
PAVRNGLPTREVISGDPDALPAELLAGPCDSGRRWEWDGVGFELWRWASAVESNQKSCVLLVEAGGERLLLTGDIDIHAE
RALLDEALALPIQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRSGLAIYDSAEQGAIRLQL
GAFELPRTEAGHRRYWRDRPTVGPPGQY

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=785161 PSH86_RS21980 WP_305484895.1 4989086..4991332(-) (comA) [Pseudomonas sp. FP2300]
ATGCGCACAGGGTTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGATTTTTTTACCGGCACTGCCACCGTTGTGGCTGAT
TGCAGCCATGCCGGTAGTGGCATTGATGGCGTTGCCGTTTCGAACCTATCCGCTGGGTTTCTTCCTGTTCGGGCTGGCCT
GGGCCTGTCTGTCGGCGCAGTTTGCGCTGGACGATCGGTTATCCGTCGCGCTCGATGGAGAAACCCGTTGGGTCGAGGGG
CGCGTCGTCGGTTTGCCGCAACAGGGCGATGGCGTGGTGCGTTTCGAACTGGCTGATGCCCGTTCACGTCGTACCCGGCT
ACCGACGACACTGCGTCTCGCGTGGTTCGGTGGCCCGCCGGTCAACAGCGGCGAGCGCTGGCGATTGGCGGTGAAACTCA
AGCGACCCGCCGGGTTGCTGAACCCACACGGCTTCGATTATTCAGCCTGGTTGTTGAGTCGCGGCATCGGCGCGACCGGT
ACGATCAAGGACGGCCGTCTTTTGCAGGCGGCCCGGGGCGCCTGGCGGGATGAGGTGCGCCAGGCGCTGGCACAGGTCGA
CGCCCACGGCCGCTCCGGTGCGCTGGCAGCGCTGGTTCTGGGCGACGGCGGCGGGCTGACTCGCGAAGATTGGCAGGTGC
TGCAAGACACCGGCACCGTCCACTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTTGCCGGCCTGGTTTACCTGTTG
GTAGCTGGCGCGGCGCGCTATGGCCTGTGGCCGGCAGGTCTGGCGTGGTTGCCTTGGGCCTGCGCGCTGGCCTTCTGCGC
CGCCCTGGGCTACGGCTTGCTCGCCGGGTTCGAGGTGCCGGTGCGGCGGGCCTGCACGATGATCGGCCTGGTGTTGTTGT
GGCGCTTGCGCTTCAAGCAGCCAGATCCGTGGTGGGCGTGGCTGCTGGCCTTCGCCGGAGTGCTGGTGTTCGACCCGCTG
GCCAACCTGCGGCCAGGGTTCTGGTTATCGTTTGCGGCTGTCGCCATCTTGATGTTCACCTTTGGCGGTCGCCTGGGATC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGGTCGCGGTCGGCCTGTGTCCGTTGTTGTTGATCGTGGGGT
TGCCGGTCAGTCTCAGCGGGCCGCTGGTGAACCTGCTCGCGGTGCCCTGGATCAGCCTGTTGGTCTTGCCGTCGGCGCTG
CTCGGTACGGCGTTGTTGCCGGTCCCTCTCATTGGCGAAGGACTGCTGTGGATCGCCGGCGGACTGCTCGATCTGTTGTT
CAAGGGGCTGACGCTGGTCGCCGGACGAATGCCGGCCTGGGTCCCGGCCGCAGTCCCGAACTGGGCCCTGGGTATCGCCG
TTCTCGGCGCTTTTCTGCTGCTGTTGCCCAAAGGTGTGCCGCTACGTGTACTGGGGTGGCCAATGGTGTTGCTGATGGTT
TTTCCACCGCGAGAACACCTGCCGCCAGGGCAAGCCGAGATCTGGCAACTGGATGTGGGCCAGGGGCTGGCGGTGCTGGT
GCGGACCCGACGGCACACCCTGCTATACGACGCCGGGCCGCGTTTTGGCGAGGCCGATGTGGGCGAGCGGGTCGTCCTGC
CGACCTTGCGCAAACTGGGGGTTCGAGGCTTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGTGGTGCC
CCGGCCGTACGCAACGGGCTGCCGACGAGGGAAGTGATCAGCGGCGATCCCGATGCGCTGCCCGCCGAGTTGCTGGCCGG
GCCTTGTGACAGTGGCCGGCGCTGGGAGTGGGACGGGGTAGGGTTCGAGCTATGGCGATGGGCCTCTGCTGTCGAAAGCA
ACCAGAAATCCTGTGTCTTGCTGGTGGAGGCCGGCGGTGAACGCTTGCTGCTGACCGGCGATATCGACATCCATGCCGAA
CGCGCCTTGCTCGACGAGGCCCTGGCACTACCGATCCAGTGGCTGGCCGCGCCTCACCATGGCAGCCGCAGTTCGTCGTC
GATGGCGCTGCTGTCACGTCTCAAGCCGCATTCGGTGTTGATTTCCCGAGGGCAGGGCAACGCGTTCGGCCATCCCCATC
CGCAGGTGATGGCCCGCTATCGACGCTCGGGCCTGGCGATCTACGACAGCGCCGAGCAGGGCGCCATTCGTCTGCAACTG
GGGGCTTTCGAGCTGCCGCGCACAGAGGCCGGACACCGACGTTACTGGCGCGATCGGCCAACAGTCGGGCCACCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.53

95.856

0.58
  comA Ralstonia pseudosolanacearum GMI1000

32.468

100

0.368