Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH86_RS21975 Genome accession   NZ_CP117440
Coordinates   4988355..4988990 (-) Length   211 a.a.
NCBI ID   WP_162893858.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2300     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4983355..4993990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH86_RS21940 (PSH86_21935) - 4983734..4984204 (-) 471 WP_305484882.1 (2Fe-2S)-binding protein -
  PSH86_RS21945 (PSH86_21940) murB 4984471..4985490 (-) 1020 WP_305484884.1 UDP-N-acetylmuramate dehydrogenase -
  PSH86_RS21950 (PSH86_21945) - 4985487..4985951 (-) 465 WP_109754397.1 low molecular weight protein-tyrosine-phosphatase -
  PSH86_RS21955 (PSH86_21950) kdsB 4985951..4986715 (-) 765 WP_109754398.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH86_RS21960 (PSH86_21955) - 4986712..4986897 (-) 186 WP_003179363.1 Trm112 family protein -
  PSH86_RS21965 (PSH86_21960) lpxK 4986920..4987930 (-) 1011 WP_305484890.1 tetraacyldisaccharide 4'-kinase -
  PSH86_RS21970 (PSH86_21965) - 4987930..4988358 (-) 429 WP_013694002.1 biopolymer transporter ExbD -
  PSH86_RS21975 (PSH86_21970) exbB 4988355..4988990 (-) 636 WP_162893858.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH86_RS21980 (PSH86_21975) comA 4989086..4991332 (-) 2247 WP_305484895.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH86_RS21985 (PSH86_21980) - 4991477..4991992 (+) 516 WP_046063671.1 DUF2062 domain-containing protein -
  PSH86_RS21990 (PSH86_21985) - 4992091..4993313 (+) 1223 WP_122568800.1 IS3 family transposase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22884.98 Da        Isoelectric Point: 7.3613

>NTDB_id=785160 PSH86_RS21975 WP_162893858.1 4988355..4988990(-) (exbB) [Pseudomonas sp. FP2300]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGDKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785160 PSH86_RS21975 WP_162893858.1 4988355..4988990(-) (exbB) [Pseudomonas sp. FP2300]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAACTGCGGGCCAGTTCGCCCTTGGGCGAAGTCCTCGCCGCCGGACTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTACAT
CAATACCCTGGGGACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTGGGTACCGTGTTGGGCATGATCGACATCTTCA
GTGCGTTTACCGGCTCGGGCATGACCACCAACGCCGCGGTACTGGCGGGGGGGATTTCCAAGGCCCTGATCACCACTGCC
GCCGGCCTGATGGTGGGTATTCCGGCCGTGTTCTTCCATCGGTTCCTGCAACGCCGCGTGGACGAACTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAAGGTGACCGTGATGTGGACCTGGCTGGGGACAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844