Detailed information NTG0785079

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH81_RS04055
• Genome accession: NZ_CP117437
• Coordinates: 947140..948006 (-)
• Length: 288 a.a.
• NCBI ID: WP_305392054.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP2335
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 942140..953006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH81_RS04020 (PSH81_04020)	-	943040..944338 (-)	1299	WP_192297744.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH81_RS04025 (PSH81_04025)	-	944399..944572 (-)	174	WP_064450648.1	DUF3094 family protein	-
PSH81_RS04030 (PSH81_04030)	-	944627..945256 (-)	630	WP_003188431.1	DUF1780 domain-containing protein	-
PSH81_RS04035 (PSH81_04035)	-	945356..946045 (+)	690	WP_192297840.1	energy-coupling factor ABC transporter permease	-
PSH81_RS04040 (PSH81_04040)	-	946111..946326 (+)	216	WP_003171680.1	hypothetical protein	-
PSH81_RS04045 (PSH81_04045)	yacG	946323..946523 (-)	201	WP_017737928.1	DNA gyrase inhibitor YacG	-
PSH81_RS04050 (PSH81_04050)	coaE	946520..947143 (-)	624	WP_305392053.1	dephospho-CoA kinase	-
PSH81_RS04055 (PSH81_04055)	pilD	947140..948006 (-)	867	WP_305392054.1	A24 family peptidase	Machinery gene
PSH81_RS04060 (PSH81_04060)	pilC	948003..949211 (-)	1209	WP_305392055.1	type II secretion system F family protein	Machinery gene
PSH81_RS04065 (PSH81_04065)	-	949414..949827 (+)	414	WP_230412800.1	pilin	-
PSH81_RS04070 (PSH81_04070)	-	949863..951266 (+)	1404	WP_305392056.1	O-antigen ligase	-
PSH81_RS04080 (PSH81_04080)	-	951516..951821 (+)	306	WP_226456518.1	DUF6388 family protein	-
PSH81_RS04085 (PSH81_04085)	nadC	951884..952732 (-)	849	WP_305392057.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32018.29 Da
• Isoelectric Point: 7.0628

>NTDB_id=785079 PSH81_RS04055 WP_305392054.1 947140..948006(-) (pilD) [Pseudomonas sp. FP2335]
MSLLLSEHPWAFIGMALVLGLIVGSFLNVLVWRLPKMLEREWRAQAQEVLGLPTEPPGPTYNLMHPNSCCPHCNQPIRPW
ENIPLLSFLLLRGRCAHCREPISARYPCTELACALLSAVVAWHFGFGWPAAAVMLLTWGLLAMSLIDADHQLLPDVLVLP
LMWLGLVLNSFELLVTLPDALWGAVIGYMSLWTVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLLGVF
VGLILMRLRKTEASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=785079 PSH81_RS04055 WP_305392054.1 947140..948006(-) (pilD) [Pseudomonas sp. FP2335]
TTGAGCTTGCTGCTGAGCGAACACCCTTGGGCCTTTATCGGCATGGCGCTGGTGCTGGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGTCTGCCGAAAATGCTCGAACGCGAATGGCGCGCCCAGGCCCAGGAAGTCCTCGGCCTGCCGA
CCGAGCCACCCGGCCCGACCTACAACCTGATGCACCCCAACTCCTGCTGCCCGCATTGCAATCAGCCGATTCGTCCCTGG
GAAAACATCCCGCTGTTGAGCTTCCTGCTCCTCAGGGGGCGCTGCGCTCATTGCCGTGAGCCGATCAGTGCACGCTACCC
CTGCACCGAACTGGCCTGCGCGCTGCTTTCGGCCGTGGTTGCCTGGCACTTCGGTTTTGGCTGGCCAGCGGCAGCGGTGA
TGCTGCTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGATGCGGACCACCAACTACTGCCGGATGTTCTGGTACTGCCG
CTGATGTGGCTGGGGCTGGTCCTCAACAGTTTCGAGTTGCTGGTGACACTGCCCGATGCGCTGTGGGGTGCAGTGATCGG
CTATATGAGCCTATGGACAGTGTTCTGGCTGTTCAAACTCGCCACCGGCAAGGACGGTATGGGCCATGGAGACTTCAAGT
TACTGGCCCTGCTGGGTGCCTGGGGCGGCTGGCAGATCCTGCCGATGACCCTGCTGATGTCTTCATTGCTGGGGGTGTTT
GTCGGGCTGATCCTGATGCGCCTGCGCAAGACCGAAGCGTCGACCCCGATGCCGTTCGGTCCTTATCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCCGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.48	96.875	0.528
pilD	Vibrio campbellii strain DS40M4	51.408	98.611	0.507
pilD	Acinetobacter nosocomialis M2	50.183	94.792	0.476
pilD	Acinetobacter baumannii D1279779	50.183	94.792	0.476
pilD	Neisseria gonorrhoeae MS11	50	93.75	0.469