Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V76_RS10740 Genome accession   NZ_CP130541
Coordinates   2160343..2160738 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain SA09-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2155343..2165738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V76_RS10715 thiE 2155941..2156582 (-) 642 WP_000483147.1 thiamine phosphate synthase -
  Q3V76_RS10720 thiM 2156584..2157375 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  Q3V76_RS10725 thiD 2157359..2158189 (-) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V76_RS10730 tenA 2158182..2158871 (-) 690 WP_000396067.1 thiaminase II -
  Q3V76_RS10735 sceD 2159259..2159954 (-) 696 WP_000751997.1 lytic transglycosylase SceD -
  Q3V76_RS10740 ssb 2160343..2160738 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V76_RS10745 istB 2160881..2161642 (-) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  Q3V76_RS10750 istA 2161635..2162927 (-) 1293 WP_000777467.1 IS21 family transposase -
  Q3V76_RS10755 - 2163138..2163578 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V76_RS10760 fabZ 2163635..2164075 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V76_RS10765 murA 2164109..2165374 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V76_RS10770 - 2165485..2165718 (-) 234 WP_000384520.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=785061 Q3V76_RS10740 WP_000932694.1 2160343..2160738(-) (ssb) [Staphylococcus aureus strain SA09-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=785061 Q3V76_RS10740 WP_000932694.1 2160343..2160738(-) (ssb) [Staphylococcus aureus strain SA09-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992