Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH58_RS07960 Genome accession   NZ_CP117434
Coordinates   1807789..1808424 (+) Length   211 a.a.
NCBI ID   WP_177513903.1    Uniprot ID   -
Organism   Pseudomonas hefeiensis strain FP53     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1802789..1813424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH58_RS07940 (PSH58_07940) - 1802974..1803906 (+) 933 WP_305388848.1 ABC transporter ATP-binding protein -
  PSH58_RS07945 (PSH58_07945) - 1803903..1804682 (+) 780 WP_305388849.1 ABC transporter permease -
  PSH58_RS07950 (PSH58_07950) - 1804785..1805300 (-) 516 WP_256231515.1 DUF2062 domain-containing protein -
  PSH58_RS07955 (PSH58_07955) comA 1805446..1807692 (+) 2247 WP_305388851.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH58_RS07960 (PSH58_07960) exbB 1807789..1808424 (+) 636 WP_177513903.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH58_RS07965 (PSH58_07965) - 1808421..1808849 (+) 429 WP_047228182.1 biopolymer transporter ExbD -
  PSH58_RS07970 (PSH58_07970) lpxK 1808849..1809859 (+) 1011 WP_305388852.1 tetraacyldisaccharide 4'-kinase -
  PSH58_RS07975 (PSH58_07975) - 1809884..1810069 (+) 186 WP_003179363.1 Trm112 family protein -
  PSH58_RS07980 (PSH58_07980) kdsB 1810066..1810830 (+) 765 WP_305388853.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH58_RS07985 (PSH58_07985) - 1810830..1811294 (+) 465 WP_305388854.1 low molecular weight protein-tyrosine-phosphatase -
  PSH58_RS07990 (PSH58_07990) murB 1811291..1812310 (+) 1020 WP_305388855.1 UDP-N-acetylmuramate dehydrogenase -
  PSH58_RS07995 (PSH58_07995) - 1812567..1813037 (+) 471 WP_256231509.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22939.12 Da        Isoelectric Point: 8.0841

>NTDB_id=785007 PSH58_RS07960 WP_177513903.1 1807789..1808424(+) (exbB) [Pseudomonas hefeiensis strain FP53]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKKLNKDRLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFTGAGMTANASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785007 PSH58_RS07960 WP_177513903.1 1807789..1808424(+) (exbB) [Pseudomonas hefeiensis strain FP53]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGTGGCGCTGGGGATTGTTGC
CGAACGGCTGTGGACCCTGCGGGCCAGTCGCGTGACCCCGGAGCATTTGCTTGGCCAGGTCTGGGTCTGGATCAAGGACA
AGAAACTGAACAAGGACCGGCTCAAGGAGCTGCGGGCCAGTTCACCGCTGGGTGAAATCCTCGCCGCGGGCCTGGCAAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAAGCCGCCGCCCGGGTCATCCATGAGCTGGAACGCTACAT
CAATGCCCTGGGCACCATCGCCGCCATGGCCCCGTTGCTGGGCCTGCTGGGCACGGTGTTGGGCATGATCGACATTTTCA
GTTCGTTCACCGGCGCCGGCATGACCGCCAATGCCTCGGTGCTGGCAGGGGGGATTTCCAAGGCCTTGATCACCACGGCC
GCCGGATTGATGGTGGGGATTCCTTCCGTGTTCTTCCATCGGTTCCTGCAGAGACGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAAGGCGACCGTGACGTGGACCTGGCCGAGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.286

99.526

0.839