Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH58_RS07955 Genome accession   NZ_CP117434
Coordinates   1805446..1807692 (+) Length   748 a.a.
NCBI ID   WP_305388851.1    Uniprot ID   -
Organism   Pseudomonas hefeiensis strain FP53     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1800446..1812692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH58_RS07930 (PSH58_07930) - 1801512..1802171 (+) 660 WP_305388846.1 transglutaminase family protein -
  PSH58_RS07935 (PSH58_07935) - 1802217..1802840 (+) 624 WP_305388847.1 glutathione S-transferase -
  PSH58_RS07940 (PSH58_07940) - 1802974..1803906 (+) 933 WP_305388848.1 ABC transporter ATP-binding protein -
  PSH58_RS07945 (PSH58_07945) - 1803903..1804682 (+) 780 WP_305388849.1 ABC transporter permease -
  PSH58_RS07950 (PSH58_07950) - 1804785..1805300 (-) 516 WP_256231515.1 DUF2062 domain-containing protein -
  PSH58_RS07955 (PSH58_07955) comA 1805446..1807692 (+) 2247 WP_305388851.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH58_RS07960 (PSH58_07960) exbB 1807789..1808424 (+) 636 WP_177513903.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH58_RS07965 (PSH58_07965) - 1808421..1808849 (+) 429 WP_047228182.1 biopolymer transporter ExbD -
  PSH58_RS07970 (PSH58_07970) lpxK 1808849..1809859 (+) 1011 WP_305388852.1 tetraacyldisaccharide 4'-kinase -
  PSH58_RS07975 (PSH58_07975) - 1809884..1810069 (+) 186 WP_003179363.1 Trm112 family protein -
  PSH58_RS07980 (PSH58_07980) kdsB 1810066..1810830 (+) 765 WP_305388853.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH58_RS07985 (PSH58_07985) - 1810830..1811294 (+) 465 WP_305388854.1 low molecular weight protein-tyrosine-phosphatase -
  PSH58_RS07990 (PSH58_07990) murB 1811291..1812310 (+) 1020 WP_305388855.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 81179.32 Da        Isoelectric Point: 9.8475

>NTDB_id=785006 PSH58_RS07955 WP_305388851.1 1805446..1807692(+) (comA) [Pseudomonas hefeiensis strain FP53]
MRTGMLALALGLLTPVFCPALPPLWLIAVMPVLALMVLPFRTHPLGFFLIGLAWACLLAQMALDERLPVALDGETRWVEG
RVVGLPQYSEGVVRFELADTHSRRTRLPASMRLAWFGGPPVSSGERWRLAVKLKRPVGLLNPHGFDYQAWLLSRGIGATG
TVKDGHLQQPAQGAWRDGVRQALAQVDAQGRSGALAALVLGDGGGLSRDDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGVWPARLPWLPWACALAFSAALGYGLLAGFEVPVRRACAMIALVLLWRLRYRHPDPWWAWLLAFNGVLVFDPL
ASLRLGFWLSFAAVAILVFTFGARLGPWRWWQTWTRAQWLVAVGLCPILLILGLPVSLSGPLVNLLAVPWVSLLVLPPAL
LGTALLPVPFVGEGLLWIAGGLLDLLFKGLALAAGRIPAWVPAAIPVWAWGMAALGALLLLLPKGVPLRVLGWPMLLLVV
FPPREEVPPGQAEIWQLDVGQGLAVLVRTRRHTLLYDAGPRFGEADAGERVVLPTLRKLGVAGLDLMLLSHADADHAGGA
QTVRNGLPTTRVVSGDPAALPAALQAEACDSGARWEWDGVWFELWQWSSALESNQRSCVLLIEAGGERLLLTGDIDSHAE
RALLDGPLAVPIQWLAAPHHGSRSSSSMVLLSRLRPHSVLISRGQGNAFGHPHPRVMARYRRLGMAIYDSAEQGAIRLQL
GAFEPPHLQAGQRRYWRDPPSAGPWPQP

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=785006 PSH58_RS07955 WP_305388851.1 1805446..1807692(+) (comA) [Pseudomonas hefeiensis strain FP53]
ATGCGCACAGGGATGCTCGCGCTTGCACTCGGGCTGCTGACCCCGGTTTTTTGCCCGGCGCTGCCGCCGCTGTGGCTGAT
TGCGGTCATGCCTGTGCTGGCGCTGATGGTTTTGCCGTTTCGAACTCATCCACTGGGTTTTTTCCTGATCGGGCTGGCTT
GGGCCTGTCTGTTGGCGCAGATGGCCTTGGACGAGCGGTTACCTGTCGCGCTGGACGGAGAAACCCGCTGGGTCGAAGGG
CGCGTCGTCGGGTTACCGCAATACAGCGAGGGTGTGGTGCGTTTCGAACTGGCCGATACCCATTCCCGCCGCACACGGCT
GCCGGCGTCGATGCGCCTGGCCTGGTTCGGTGGACCGCCTGTGAGCAGCGGCGAGCGATGGCGATTGGCGGTGAAGCTCA
AGCGCCCCGTCGGTCTCCTGAACCCCCATGGCTTCGATTACCAAGCCTGGCTGTTGAGTCGGGGCATCGGCGCGACCGGT
ACGGTAAAGGACGGTCATCTCCAGCAACCTGCCCAAGGTGCCTGGCGTGACGGTGTGCGTCAGGCGCTGGCGCAAGTTGA
CGCCCAGGGCCGCTCCGGGGCGCTGGCGGCATTGGTCCTGGGGGACGGCGGCGGATTGAGCCGCGATGACTGGCAGGTGC
TGCAAGACACCGGCACGGTCCATCTGTTGGTGATTTCCGGGCAACATATCGGGCTGCTCGCCGGGCTGGTGTATCTGCTG
GTGGCCGGTGCGGCGCGCTATGGTGTGTGGCCGGCGCGTCTGCCGTGGTTACCTTGGGCCTGCGCGCTGGCCTTCAGCGC
AGCCTTGGGCTACGGCTTGCTCGCCGGCTTCGAGGTGCCAGTGCGGCGAGCCTGCGCCATGATCGCCCTGGTGCTGCTGT
GGCGCTTGCGTTACCGGCATCCGGACCCTTGGTGGGCGTGGCTGCTGGCTTTCAATGGGGTGCTGGTGTTCGATCCGCTG
GCCAGCCTGCGGCTGGGGTTCTGGCTGTCGTTCGCCGCGGTGGCGATCCTGGTGTTTACTTTTGGCGCTCGGCTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGGTTGCGGTCGGGCTGTGCCCGATATTGTTGATATTGGGTT
TGCCGGTCAGCCTCAGCGGACCCCTGGTGAACCTGTTGGCGGTGCCTTGGGTCAGCCTGTTGGTGTTGCCGCCGGCGCTG
CTCGGTACGGCGTTGCTGCCGGTGCCGTTCGTGGGTGAAGGACTGCTTTGGATCGCCGGCGGGTTGCTCGATCTGCTATT
CAAGGGGCTGGCGCTGGCGGCCGGACGAATACCGGCATGGGTGCCTGCGGCTATCCCTGTATGGGCATGGGGCATGGCCG
CTCTTGGGGCTTTGTTACTGTTGCTGCCCAAAGGTGTGCCGCTGCGGGTACTGGGATGGCCCATGTTGCTGCTGGTGGTT
TTTCCTCCGCGGGAGGAAGTTCCACCAGGCCAAGCTGAAATCTGGCAACTGGACGTGGGCCAAGGCTTGGCGGTGTTGGT
GCGCACCCGTCGTCATACGTTGCTTTACGATGCGGGGCCGCGCTTTGGCGAGGCCGACGCGGGTGAGCGCGTGGTGCTGC
CCACCTTGCGCAAGCTGGGCGTCGCCGGGTTGGACCTGATGCTGCTCAGTCATGCTGACGCCGATCACGCCGGAGGCGCC
CAAACGGTACGCAACGGGTTACCAACGACTCGGGTCGTCAGCGGAGACCCGGCCGCGTTGCCTGCCGCTTTGCAGGCAGA
GGCGTGCGACAGTGGTGCGCGCTGGGAATGGGACGGGGTCTGGTTCGAGCTGTGGCAATGGTCATCAGCCCTTGAAAGCA
ACCAGCGGTCCTGCGTTTTGCTGATCGAGGCGGGGGGTGAGCGGCTGTTGCTCACCGGAGACATCGATAGCCATGCCGAG
CGCGCTTTGCTCGACGGGCCTCTGGCGGTGCCGATCCAGTGGCTGGCGGCGCCCCATCACGGTAGCCGCAGTTCATCGTC
GATGGTGCTGCTGTCACGCCTCAGACCCCATTCGGTGTTGATCTCCCGAGGCCAGGGCAATGCATTCGGGCACCCTCATC
CCCGGGTGATGGCTCGCTATCGCCGCTTGGGCATGGCGATCTACGACAGCGCTGAACAGGGTGCCATTCGTCTGCAACTG
GGAGCCTTCGAACCGCCGCACCTTCAGGCCGGCCAACGGCGATACTGGCGCGACCCGCCGTCTGCGGGACCATGGCCGCA
ACCTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-667)

Domain of unknown function (DUF4131) (DUF4131)

(22-165)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.173

95.722

0.586