Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH95_RS16380 Genome accession   NZ_CP117433
Coordinates   3545840..3548065 (-) Length   741 a.a.
NCBI ID   WP_305436192.1    Uniprot ID   -
Organism   Pseudomonas simiae strain FP55     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3540840..3553065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH95_RS16345 (PSH95_16340) murB 3541245..3542264 (-) 1020 WP_183703146.1 UDP-N-acetylmuramate dehydrogenase -
  PSH95_RS16350 (PSH95_16345) - 3542261..3542725 (-) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  PSH95_RS16355 (PSH95_16350) kdsB 3542725..3543489 (-) 765 WP_154847091.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH95_RS16360 (PSH95_16355) - 3543486..3543671 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH95_RS16365 (PSH95_16360) lpxK 3543696..3544706 (-) 1011 WP_010209651.1 tetraacyldisaccharide 4'-kinase -
  PSH95_RS16370 (PSH95_16365) - 3544706..3545134 (-) 429 WP_010209650.1 biopolymer transporter ExbD -
  PSH95_RS16375 (PSH95_16370) exbB 3545131..3545766 (-) 636 WP_010209649.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH95_RS16380 (PSH95_16375) comA 3545840..3548065 (-) 2226 WP_305436192.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH95_RS16385 (PSH95_16380) - 3548201..3548716 (+) 516 WP_021492748.1 DUF2062 domain-containing protein -
  PSH95_RS16390 (PSH95_16385) - 3548713..3550083 (-) 1371 WP_305436194.1 sensor histidine kinase -
  PSH95_RS16395 (PSH95_16390) - 3550070..3550798 (-) 729 WP_021492750.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80451.46 Da        Isoelectric Point: 11.1468

>NTDB_id=784989 PSH95_RS16380 WP_305436192.1 3545840..3548065(-) (comA) [Pseudomonas simiae strain FP55]
MRTGMFAFALGLLALRFLPALPPTGWLIALLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLRPALEGQTRWVEG
QVSGLPQQTGDGVRFVLTDSRSRNARLPKRIRVSWRGGPPVRSGERWRLAITLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPATAAWRDSVRQRLLAVDAQGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGFWPRTWPWLPWACGLAFTTALGYGLLAGFGVPVQRACVMVGLVLLWRWRLRHLGLWRPLLLALNGVLVLEPL
ASVQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGSALLVLPFVGEGLLWLAGGALDALFNGLAWLAGRMPAWIPAEVPPGYWLVSLLGATLLLLPKGVPFRVLGWPMLLLAV
FPPRAPVPDGQVEVTQLDVGQGQSLILRTRHHTLLYDAGPRSGAFDLGARVVLPSLRKLGIGELDMLLLSHADADHAGGA
AAIAKGMPIKRVVGGETEGLPISLGTQPCVSGERWTWDGVTFELWQWPDAISGNAKSCVLQVQAKGERLLLTGDIDRAAE
HAMLASPLAVPTDWLQAPHHGSRSSSSWPFVERLAPRSVLISRGRSNAFGHPHPQVMARYQRSGSQVYDTAEQGAVRLRL
GAFAAPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=784989 PSH95_RS16380 WP_305436192.1 3545840..3548065(-) (comA) [Pseudomonas simiae strain FP55]
ATGAGGACAGGGATGTTCGCGTTTGCGCTGGGGTTGCTGGCCTTGCGCTTTTTACCGGCATTGCCGCCGACCGGTTGGCT
GATCGCCCTGCTGGTGTTGGCCTTGATGCTGTTGCCGTTTCGCACTTATCCCTTGGCGTTTTTTCTGTTGGGGCTGAGTT
GGGCCTGTATCAGCGCGCAGTGGGCGCTGGATGACCGTCTCAGGCCCGCGCTGGAGGGGCAAACACGCTGGGTGGAAGGG
CAGGTCAGCGGGCTGCCGCAACAGACGGGCGATGGCGTGCGCTTCGTACTCACCGACAGTCGGTCGCGTAACGCTCGGTT
GCCCAAGCGCATCCGGGTGTCCTGGCGCGGTGGGCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTGGCAATCACCCTCA
AGCGGCCGGCCGGGTTGCTGAACTTTCATGGGTTTGATCAGGAGGCCTGGCTGCTCGCCCAGCGCATCGGCGCCACGGGT
ACGGTAAAGGACGGAGAGCGCCTGGCCCCGGCTACCGCCGCCTGGCGTGACAGTGTGCGTCAGCGCCTGCTGGCGGTAGA
TGCCCAAGGCAGGGAGGCAGGCCTGATTGCCTTGGTGTTGGGCGATGGCTCTGGATTGGCGGCGGCTGATTGGCAGGTAC
TGCAGGACACCGGCACTGTGCACCTGCTGGTCATCTCCGGCCAGCACATCGGCTTGCTCGCTGGCTTGATCTACGGATTG
ATCGCCGGCCTGGCGCGCTATGGGTTCTGGCCTCGAACCTGGCCGTGGCTGCCGTGGGCCTGTGGGCTGGCGTTCACCAC
GGCATTGGGTTATGGCTTGCTGGCCGGGTTTGGCGTGCCGGTACAGCGCGCCTGTGTGATGGTTGGGTTGGTATTGTTGT
GGCGATGGCGCTTGCGTCATCTCGGGCTGTGGCGGCCGTTGTTGCTGGCGCTCAATGGGGTGCTGGTCCTGGAACCATTG
GCCAGTGTGCAGCCGGGTTTCTGGCTGTCATTTGCGGCGGTGGCGGTGCTGATCCTGGCGTTTGGCGGACGGCTGGGGCC
CTGGAGCCTATGGCAGGCCTGGACCCGGCCGCAGTGGTTGATTGCCATCGGGTTGTTTCCGGTCTTGCTGGTGTTGGGGT
TGCCCATCAGCCTGAGCGCACCATTCGCTAACCTGGTGGCGGTGCCATGGATCAGCCTGGTGGTATTGCCGTTGGCCCTG
TTGGGCAGCGCATTGCTGGTGCTGCCGTTTGTGGGGGAAGGATTGCTCTGGCTGGCGGGAGGGGCGCTGGATGCCTTGTT
TAACGGCTTGGCGTGGCTCGCCGGGCGGATGCCGGCCTGGATTCCGGCCGAAGTACCGCCGGGGTATTGGCTGGTGAGTC
TGCTGGGCGCCACGTTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGTGTGCTGGGCTGGCCGATGCTGTTGCTGGCGGTG
TTTCCACCGCGAGCGCCGGTGCCTGACGGGCAGGTGGAGGTGACGCAGCTTGACGTCGGCCAGGGGCAATCGCTGATTTT
GCGTACCCGCCATCACACCTTGCTGTACGACGCCGGCCCGCGCTCCGGAGCTTTTGACCTGGGGGCCCGCGTGGTACTGC
CATCTTTGCGAAAACTCGGGATAGGGGAGCTGGACATGCTGCTGCTCAGCCACGCCGACGCCGATCATGCCGGTGGCGCG
GCAGCCATTGCCAAAGGCATGCCGATCAAGCGCGTGGTGGGCGGAGAGACCGAAGGCCTGCCAATATCGCTCGGCACCCA
GCCTTGCGTCAGTGGCGAGCGCTGGACCTGGGACGGCGTGACCTTCGAACTCTGGCAATGGCCTGACGCTATCAGCGGCA
ACGCGAAGTCCTGCGTTTTGCAGGTGCAGGCCAAGGGTGAGCGCCTGTTGCTGACCGGTGATATTGACCGCGCAGCCGAA
CACGCCATGCTCGCGTCCCCCCTTGCGGTGCCCACCGATTGGCTGCAGGCGCCGCACCATGGCAGTCGCAGTTCTTCGTC
CTGGCCCTTTGTGGAGCGACTAGCGCCGCGATCCGTGCTGATCTCGCGTGGGCGCAGCAACGCGTTCGGCCATCCCCATC
CGCAGGTGATGGCGCGTTACCAGCGGTCGGGCAGCCAGGTGTATGACACTGCCGAGCAGGGCGCCGTGCGTCTGCGATTG
GGGGCTTTCGCAGCGCCGGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAGCGGTTACCTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.556

97.166

0.588
  comA Ralstonia pseudosolanacearum GMI1000

35.218

100

0.404