Detailed information NTG0784937

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PSH65_RS04420
• Genome accession: NZ_CP117431
• Coordinates: 939736..941076 (-)
• Length: 446 a.a.
• NCBI ID: WP_305425089.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP603
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 934736..946076

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH65_RS04405 (PSH65_04405)	-	934937..938053 (+)	3117	WP_305425086.1	pilus assembly protein	-
PSH65_RS04410 (PSH65_04410)	-	938068..938469 (+)	402	WP_305425087.1	type IV pilin protein	-
PSH65_RS04415 (PSH65_04415)	thiO	938528..939628 (+)	1101	WP_305425088.1	glycine oxidase ThiO	-
PSH65_RS04420 (PSH65_04420)	pilR	939736..941076 (-)	1341	WP_305425089.1	sigma-54 dependent transcriptional regulator	Regulator
PSH65_RS04425 (PSH65_04425)	pilS	941079..942668 (-)	1590	WP_305425090.1	PAS domain-containing sensor histidine kinase	Regulator
PSH65_RS04430 (PSH65_04430)	-	942658..942891 (-)	234	WP_305425091.1	PP0621 family protein	-
PSH65_RS04435 (PSH65_04435)	-	943028..944050 (-)	1023	WP_305425092.1	outer membrane protein assembly factor BamD	-
PSH65_RS04440 (PSH65_04440)	rluD	944203..945165 (+)	963	WP_038981503.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PSH65_RS04445 (PSH65_04445)	pgeF	945162..945887 (+)	726	WP_305425093.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49748.18 Da
• Isoelectric Point: 6.7529

>NTDB_id=784937 PSH65_RS04420 WP_305425089.1 939736..941076(-) (pilR) [Pseudomonas sp. FP603]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLARETFDLCLTDMRLPDGTGLALVQHIQQRYAQVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTCALSLPAPGGASSAIDRRLLGDSLPMRSLRKQIDKLARSQAPV
YISGESGSGKELVARLIHDQGPRATRPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAQGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLDTEVTAERFRQDLYYRLNVIELRVPPLRERRDDIELLANN
MLKRLATGTGQPAAKLHPQALDALKSYRFPGNVRELENMLERAHTLCENKQIEASDLRLVEGNCNSDSDVPDLTQIDNLE
AYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=784937 PSH65_RS04420 WP_305425089.1 939736..941076(-) (pilR) [Pseudomonas sp. FP603]
ATGAGCCCACGGCAAAAAATCCTGATCGTCGATGATGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGACACCTTCAGCGCCCGCAACCTCGCAGAAGCGCAAGCACTGCTGGCACGGGAGACGTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCACCGGTCTGGCGCTGGTGCAGCACATCCAGCAGCGCTATGCGCAAGTGCCAGTGGCG
ATGATCACCGCCTACGGCAGCCTGGAGACGGCAATCAACGCCCTCAAGGCTGGCGCCTTCGACTTTCTGACCAAACCGGT
CGACCTCACCCGCCTGCGCGAACTGGTCACCTGCGCGCTGAGTTTGCCTGCGCCAGGCGGCGCCAGCAGTGCCATCGACC
GTCGTCTACTGGGCGACTCACTGCCAATGCGCAGCCTGCGCAAGCAAATCGACAAACTGGCCCGCAGCCAGGCTCCGGTG
TACATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTGGTCGCTCGACTGATCCACGATCAAGGCCCACGCGCCACCCGACC
ATTCGTGCCGGTGAACTGTGGGGCGATTCCGTCGGAATTGATGGAAAGCGAATTTTTCGGCCATCGCAAAGGCAGTTTCA
GCGGCGCCATCGAAGACAAACCCGGGCTGTTCCAGGCGGCCCAGGGCGGCACTTTGTTCCTCGACGAAGTGGCTGACCTG
CCGCTGGCGATGCAGGTCAAGCTGTTGCGGGCGATTCAGGAGAAAGCCGTTCGCAGCATCGGTGGGCAGCAGGAAACCGT
GGTCGATGTGCGTATCCTCTGCGCCACCCACAAAGACCTCGATACCGAAGTCACCGCCGAACGCTTTCGCCAGGACTTGT
ACTACCGTCTGAACGTGATCGAGCTGCGGGTGCCGCCCTTGCGCGAACGCCGCGACGACATTGAGCTTCTGGCCAACAAT
ATGCTCAAGCGACTGGCGACTGGCACTGGCCAACCCGCTGCAAAACTCCATCCGCAAGCCCTCGACGCACTGAAAAGCTA
TCGTTTTCCAGGAAACGTGCGGGAATTGGAGAACATGCTTGAGCGGGCGCACACCTTGTGCGAGAACAAACAAATCGAAG
CCAGCGACCTACGATTGGTGGAAGGTAACTGCAATTCGGACAGCGACGTGCCGGACCTGACGCAGATCGACAACCTGGAA
GCCTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGCGGCTCA
GCGGTTGAATCTGTCGTTTCGGTCGATGCGTTACAGGCTGAAGAAATTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.007	99.327	0.785
pilR	Acinetobacter baumannii strain A118	48.366	100	0.498