Detailed information NTG0784917

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PSH88_RS08025
• Genome accession: NZ_CP117430
• Coordinates: 1746692..1748926 (+)
• Length: 744 a.a.
• NCBI ID: WP_305425707.1
• Uniprot ID: -
• Organism: Pseudomonas wuhanensis strain FP607
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1741692..1753926

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH88_RS08000 (PSH88_08000)	-	1742704..1743363 (+)	660	WP_305425702.1	transglutaminase family protein	-
PSH88_RS08005 (PSH88_08005)	-	1743407..1744030 (+)	624	WP_305425703.1	glutathione S-transferase	-
PSH88_RS08010 (PSH88_08010)	-	1744164..1745096 (+)	933	WP_123494600.1	ABC transporter ATP-binding protein	-
PSH88_RS08015 (PSH88_08015)	-	1745093..1745872 (+)	780	WP_007905224.1	ABC transporter permease	-
PSH88_RS08020 (PSH88_08020)	-	1746034..1746555 (-)	522	WP_305425706.1	DUF2062 domain-containing protein	-
PSH88_RS08025 (PSH88_08025)	comA	1746692..1748926 (+)	2235	WP_305425707.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PSH88_RS08030 (PSH88_08030)	exbB	1749023..1749658 (+)	636	WP_305425708.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PSH88_RS08035 (PSH88_08035)	-	1749655..1750083 (+)	429	WP_095634888.1	biopolymer transporter ExbD	-
PSH88_RS08040 (PSH88_08040)	lpxK	1750083..1751093 (+)	1011	WP_305425709.1	tetraacyldisaccharide 4'-kinase	-
PSH88_RS08045 (PSH88_08045)	-	1751119..1751304 (+)	186	WP_003174668.1	Trm112 family protein	-
PSH88_RS08050 (PSH88_08050)	kdsB	1751301..1752065 (+)	765	WP_305425710.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PSH88_RS08055 (PSH88_08055)	-	1752065..1752529 (+)	465	WP_305483504.1	low molecular weight protein-tyrosine-phosphatase	-
PSH88_RS08060 (PSH88_08060)	murB	1752526..1753545 (+)	1020	WP_305425712.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81605.76 Da
• Isoelectric Point: 9.8849

>NTDB_id=784917 PSH88_RS08025 WP_305425707.1 1746692..1748926(+) (comA) [Pseudomonas wuhanensis strain FP607]
MRTGMMALALGLLALRYLPVLPPVWLWLLMPVAGLMLLPFRTFPLAFFLFGFSWAGANAQWALNDRLALNLDGETRWVEG
RVTGLPQQAEGVVRFELTDSQSRRTSLPGHLRLAWYGGPPVNSGEHWRLAVKLKRPAGLLNPHAFDYDAWLLARHIGATG
TVKDGQRLMEAKWAWRDGIRQRLQAVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGVVYLL
IAGLARYGLWPRRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACLMIGLVLLWRLRFRHLGAWWPLLLALDGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPLANLLAVPWVSLVVLPPAL
LGTILLPVPYMGDGLLWLAGGLIDLLFKGLALIAGQMPAWVPVAVPLWVWAFGTLGAFVLLLPRGVPLRPLGWPMLLLLV
FPPRHTLPEGMAEVWQLDVGQGLAILVRTRHHTLLYDAGPRFGDIDLGERVVLPSLRKLGVNGLDLMLISHADADHAGGA
RAIANGIPVKQVLSGDHLALPDELHADGCESGQQWAWDGVKFQLWQWPSASDSNQKSCVLQIEASGERLLLTGDIDAAAE
RALLDSPLAVPTDWLQAPHHGSRSSSSMSLLNVLQPKAVLISRGNGNSFGHPHPTVVARYQKRGVAIYDSAEQGAIRLQL
GRFKPPWTMLQERRFWRDLPPSSQ

Nucleotide

• Length: 2235 bp

>NTDB_id=784917 PSH88_RS08025 WP_305425707.1 1746692..1748926(+) (comA) [Pseudomonas wuhanensis strain FP607]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGCCTGCTGGCCTTGCGTTATTTACCGGTATTACCGCCGGTCTGGTTGTG
GCTGTTGATGCCGGTAGCGGGTTTGATGTTGCTGCCGTTTCGAACTTTTCCCTTGGCATTTTTTTTGTTCGGTTTCAGTT
GGGCGGGTGCGAATGCACAGTGGGCGCTGAATGATCGCCTGGCGCTGAATCTTGATGGCGAGACTCGCTGGGTCGAAGGT
CGTGTGACCGGGTTACCGCAGCAGGCCGAGGGGGTGGTGCGGTTCGAACTGACGGACAGTCAGTCGCGTCGCACCAGCCT
GCCTGGGCACCTGCGTCTGGCCTGGTATGGCGGGCCGCCCGTCAACAGCGGCGAGCATTGGCGGCTGGCGGTCAAATTGA
AGCGTCCTGCCGGGTTGCTTAACCCGCATGCGTTCGATTACGACGCCTGGTTACTGGCCCGGCACATTGGCGCCACCGGA
ACCGTCAAGGACGGTCAGCGACTGATGGAGGCGAAGTGGGCCTGGCGCGACGGCATCCGTCAGCGTTTGCAGGCCGTGGA
TGCCCAAGGGCGAACGGGGGCGCTGACAGCGTTGGTGCTGGGGGATGGCGCCGGATTGAGTCGTGAGGACTGGCAGGTGC
TGCAAGACACCGGCACCGTTCATCTGTTGGTGATTTCCGGGCAGCACATTGGTTTGCTGGCGGGAGTGGTGTATCTGCTG
ATTGCCGGTTTGGCGCGTTATGGTTTGTGGCCCAGGCGTTTGCCGTGGCTGCCATGGGCATGCGGACTGGCGTTCGCGGC
GGCGCTCGGTTATGGGCTGCTGGCCGGCTTCGAAGTGCCGGTGCGGCGGGCCTGCCTGATGATCGGTCTGGTGCTGTTGT
GGCGACTACGGTTTCGTCACCTTGGCGCATGGTGGCCGCTATTGCTGGCGCTTGACGGTGTTTTGCTGCTGGATCCGCTG
GCGAGCCTGCAACCGGGTTTCTGGTTGTCGTTTGCGGCGGTGGCGGTACTGATTTTCACTTTTGGCGGCCGATTGGGGGC
ATGGCGCTGGTGGCAAACCTGGACCCGTGCCCAATGGCTGATCGCGATCGGTCTGTGCCCGCTGCTGTTGGTGCTGGGGT
TACCGATCAGTCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGTGCCCTGGGTCAGTCTGGTGGTCCTGCCGCCGGCTTTG
CTTGGGACGATATTGTTGCCCGTTCCTTATATGGGGGACGGGTTGCTGTGGTTGGCCGGCGGTCTGATCGATCTTTTGTT
CAAGGGGTTGGCGTTGATAGCCGGGCAAATGCCCGCGTGGGTACCGGTGGCGGTCCCGTTGTGGGTATGGGCATTCGGCA
CGCTGGGCGCCTTTGTGCTGTTACTGCCGCGAGGCGTGCCGTTGCGTCCGTTGGGCTGGCCGATGTTGCTTTTGCTGGTT
TTTCCGCCCCGGCACACGTTACCTGAAGGCATGGCCGAGGTCTGGCAGCTGGATGTCGGTCAAGGTTTGGCGATTCTGGT
GCGCACTCGCCATCACACCTTGCTGTATGACGCCGGGCCACGGTTCGGCGATATCGACCTGGGGGAGCGGGTGGTGCTGC
CGTCATTGCGCAAACTGGGGGTGAACGGACTCGATCTGATGCTGATCAGCCACGCCGATGCCGATCACGCCGGCGGTGCG
CGAGCAATTGCCAATGGAATACCGGTGAAGCAAGTACTGAGTGGCGATCATCTGGCCCTGCCAGACGAACTGCACGCCGA
TGGCTGCGAGAGCGGTCAACAATGGGCCTGGGACGGCGTGAAGTTTCAACTCTGGCAGTGGCCGTCTGCCAGCGACAGCA
ATCAGAAATCCTGCGTGTTGCAGATTGAAGCCAGCGGCGAGCGGTTGCTGCTGACCGGTGACATCGATGCCGCAGCCGAG
CGGGCGCTGCTCGACAGTCCATTGGCGGTGCCGACGGATTGGTTGCAGGCCCCGCACCATGGCAGTCGCAGTTCATCTTC
GATGTCGTTGCTCAACGTATTGCAACCCAAAGCGGTGCTGATCTCCCGTGGCAACGGCAATTCTTTCGGCCATCCCCATC
CCACGGTCGTGGCGCGGTATCAAAAACGCGGCGTGGCGATCTACGACAGCGCCGAGCAAGGTGCCATTCGTCTGCAACTG
GGACGCTTCAAGCCGCCGTGGACGATGCTTCAAGAACGGCGCTTCTGGCGCGATCTGCCACCATCCAGCCAGTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.827	96.237	0.614
comA	Ralstonia pseudosolanacearum GMI1000	33.659	100	0.371