Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V61_RS10280 Genome accession   NZ_CP130536
Coordinates   2100650..2101045 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain SA13-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2095650..2106045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V61_RS10255 thiE 2096248..2096889 (-) 642 WP_303262874.1 thiamine phosphate synthase -
  Q3V61_RS10260 thiM 2096891..2097682 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  Q3V61_RS10265 thiD 2097666..2098496 (-) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V61_RS10270 tenA 2098489..2099178 (-) 690 WP_000396067.1 thiaminase II -
  Q3V61_RS10275 sceD 2099566..2100261 (-) 696 WP_000751997.1 lytic transglycosylase SceD -
  Q3V61_RS10280 ssb 2100650..2101045 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V61_RS10285 istB 2101188..2101949 (-) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  Q3V61_RS10290 istA 2101942..2103234 (-) 1293 WP_000777467.1 IS21 family transposase -
  Q3V61_RS10295 - 2103445..2103885 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V61_RS10300 fabZ 2103942..2104382 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V61_RS10305 murA 2104416..2105681 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V61_RS10310 - 2105792..2106025 (-) 234 WP_000384520.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=784702 Q3V61_RS10280 WP_000932694.1 2100650..2101045(-) (ssb) [Staphylococcus aureus strain SA13-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=784702 Q3V61_RS10280 WP_000932694.1 2100650..2101045(-) (ssb) [Staphylococcus aureus strain SA13-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992